Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ABA10_RS12615 Genome accession   NZ_CP011534
Coordinates   2457771..2458538 (-) Length   255 a.a.
NCBI ID   WP_014477369.1    Uniprot ID   A0A0D1L7G7
Organism   Bacillus subtilis strain UD1022     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2452771..2463538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABA10_RS12595 (ABA10_12595) ppsR 2452945..2453757 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  ABA10_RS12600 (ABA10_12600) ccpN 2453783..2454421 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  ABA10_RS12605 (ABA10_12605) glyS 2454554..2456593 (-) 2040 WP_047182890.1 glycine--tRNA ligase subunit beta -
  ABA10_RS12610 (ABA10_12610) glyQ 2456586..2457473 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  ABA10_RS12615 (ABA10_12615) recO 2457771..2458538 (-) 768 WP_014477369.1 DNA repair protein RecO Machinery gene
  ABA10_RS21195 (ABA10_12620) yqzL 2458575..2458718 (-) 144 WP_003230053.1 YqzL family protein -
  ABA10_RS12625 (ABA10_12625) era 2458866..2459771 (-) 906 WP_003230051.1 GTPase Era -
  ABA10_RS12630 (ABA10_12630) - 2459752..2460162 (-) 411 WP_003230049.1 cytidine deaminase -
  ABA10_RS12635 (ABA10_12635) unpK 2460281..2460652 (-) 372 WP_047182891.1 diacylglycerol kinase family protein -
  ABA10_RS12640 (ABA10_12640) ybeY 2460633..2461106 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  ABA10_RS12645 (ABA10_12645) pgpH 2461107..2463242 (-) 2136 WP_080344213.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29342.05 Da        Isoelectric Point: 8.3080

>NTDB_id=146752 ABA10_RS12615 WP_014477369.1 2457771..2458538(-) (recO) [Bacillus subtilis strain UD1022]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=146752 ABA10_RS12615 WP_014477369.1 2457771..2458538(-) (recO) [Bacillus subtilis strain UD1022]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGATTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTAAATCATTGTGTTCATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1L7G7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.608

100

0.996

Multiple sequence alignment