Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ABA10_RS11075 Genome accession   NZ_CP011534
Coordinates   2189112..2189732 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain UD1022     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2184112..2194732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABA10_RS11035 (ABA10_11035) ptsA 2185243..2185749 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  ABA10_RS11040 (ABA10_11040) ypqA 2185887..2186306 (+) 420 WP_014477158.1 Hsp20/alpha crystallin family protein -
  ABA10_RS11045 (ABA10_11045) sppG 2186327..2186704 (-) 378 WP_015251832.1 YppG family protein -
  ABA10_RS11050 (ABA10_11050) yppF 2186892..2187080 (+) 189 WP_003230690.1 YppF family protein -
  ABA10_RS11055 (ABA10_11055) yppE 2187119..2187490 (-) 372 WP_003246080.1 YppE family protein -
  ABA10_RS11060 (ABA10_11060) yppD 2187536..2187781 (-) 246 WP_047182790.1 DUF5446 family protein -
  ABA10_RS11065 (ABA10_11065) sspM 2187980..2188084 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  ABA10_RS11070 (ABA10_11070) yppC 2188109..2189071 (-) 963 WP_015383945.1 DUF2515 domain-containing protein -
  ABA10_RS11075 (ABA10_11075) recU 2189112..2189732 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  ABA10_RS11080 (ABA10_11080) ponA 2189754..2192513 (+) 2760 WP_047182791.1 PBP1A family penicillin-binding protein -
  ABA10_RS11085 (ABA10_11085) ypoC 2192589..2193083 (-) 495 WP_047182792.1 YpoC family protein -
  ABA10_RS11090 (ABA10_11090) nth 2193080..2193739 (-) 660 WP_015483371.1 endonuclease III -
  ABA10_RS11095 (ABA10_11095) dnaD 2193758..2194456 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=146740 ABA10_RS11075 WP_004399067.1 2189112..2189732(+) (recU) [Bacillus subtilis strain UD1022]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=146740 ABA10_RS11075 WP_004399067.1 2189112..2189732(+) (recU) [Bacillus subtilis strain UD1022]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment