Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ABA10_RS08775 Genome accession   NZ_CP011534
Coordinates   1676637..1677530 (+) Length   297 a.a.
NCBI ID   WP_047182610.1    Uniprot ID   -
Organism   Bacillus subtilis strain UD1022     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1671637..1682530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABA10_RS08755 (ABA10_08755) - 1672307..1674037 (+) 1731 WP_047182607.1 hypothetical protein -
  ABA10_RS08760 (ABA10_08760) ylqH 1674034..1674315 (+) 282 WP_047182608.1 FlhB-like flagellar biosynthesis protein -
  ABA10_RS08765 (ABA10_08765) sucC 1674488..1675645 (+) 1158 WP_014663957.1 ADP-forming succinate--CoA ligase subunit beta -
  ABA10_RS08770 (ABA10_08770) sucD 1675674..1676576 (+) 903 WP_047182609.1 succinate--CoA ligase subunit alpha -
  ABA10_RS08775 (ABA10_08775) dprA 1676637..1677530 (+) 894 WP_047182610.1 DNA-processing protein DprA Machinery gene
  ABA10_RS08780 (ABA10_08780) topA 1677718..1679793 (+) 2076 WP_003245599.1 type I DNA topoisomerase -
  ABA10_RS08785 (ABA10_08785) trmFO 1679869..1681176 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ABA10_RS08790 (ABA10_08790) xerC 1681244..1682158 (+) 915 WP_003231988.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32934.23 Da        Isoelectric Point: 9.9142

>NTDB_id=146736 ABA10_RS08775 WP_047182610.1 1676637..1677530(+) (dprA) [Bacillus subtilis strain UD1022]
MDQAAACLTICRINQLLSPSLLLKWWKADPSMSLTSPVLQTVTRDQIKAAALKNEIEQLYPKLQRVLTAYREQGINTIPI
SSKQYPFWLKSIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGKQVVNHLTKEICRKGWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPETKPQKWHFPMRNRIISGISEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=146736 ABA10_RS08775 WP_047182610.1 1676637..1677530(+) (dprA) [Bacillus subtilis strain UD1022]
TTGGATCAGGCCGCTGCCTGCTTAACGATTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCCGATCCGTCTATGTCGCTGACATCACCCGTGTTACAAACGGTTACTCGTGATCAAATAAAAGCAGCTGCATTAAAAA
ACGAAATAGAACAACTTTATCCAAAGCTCCAGCGTGTACTTACTGCTTATCGTGAGCAAGGCATTAACACCATCCCTATT
TCTTCAAAGCAATATCCTTTCTGGCTTAAAAGCATTTATGATCCCCCCGCCGTACTGTTTGCAAAAGGTGATATGACTCT
TCTTTCGAAAGGGAGAAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTATGGGAAACAAGTTGTCAATCATCTTA
CAAAAGAGATCTGTCGTAAAGGTTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGGCGGACAATTGGCGTCATTGCAGGCGGATTTCAACACATTTATCCCCGAGAAAACCTTCAGTTAGC
AGATCACATGGCTAAACACCATATCCTGCTGTCAGAGCACCCACCTGAAACTAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATTATCAGCGGAATAAGTGAAGGCGTTATTGTCGTTCAGGGCAAAGAAAAAAGCGGTTCGCTGATTACTGCC
TATCAAGCATTGGAACAAGGGAGAGAGGTATTTGCCGTACCCGGTTCATTATTTGACCCTTACGCCGGAGGGCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTTCGAGGAACTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

98.316

100

0.983
  dprA Lactococcus lactis subsp. cremoris KW2

41.353

89.562

0.37

Multiple sequence alignment