Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   ABA10_RS07810 Genome accession   NZ_CP011534
Coordinates   1487847..1488422 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis strain UD1022     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1482847..1493422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABA10_RS07780 (ABA10_07780) dapD 1483034..1483744 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  ABA10_RS07785 (ABA10_07785) dapI 1483814..1484938 (+) 1125 WP_047182548.1 N-acetyldiaminopimelate deacetylase -
  ABA10_RS07790 (ABA10_07790) ykuS 1485000..1485245 (+) 246 WP_003232382.1 YkuS family protein -
  ABA10_RS07795 (ABA10_07795) mscT 1485282..1486085 (-) 804 WP_041517839.1 small-conductance mechanosensitive channel protein MscT -
  ABA10_RS07800 (ABA10_07800) ahpA 1486322..1486864 (+) 543 WP_047182549.1 biofilm-specific peroxidase AhpA -
  ABA10_RS07805 (ABA10_07805) ykuV 1486935..1487381 (+) 447 WP_047182550.1 thiol-disulfide oxidoreductase YkuV -
  ABA10_RS07810 (ABA10_07810) rok 1487847..1488422 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  ABA10_RS07815 (ABA10_07815) cse15 1488463..1489428 (-) 966 WP_047182551.1 spore protein Cse15 -
  ABA10_RS07820 (ABA10_07820) mobA 1489565..1490164 (+) 600 WP_047182552.1 molybdenum cofactor guanylyltransferase -
  ABA10_RS07825 (ABA10_07825) moeB 1490215..1491234 (+) 1020 WP_015383546.1 molybdopterin-synthase adenylyltransferase MoeB -
  ABA10_RS07830 (ABA10_07830) glp 1491252..1492544 (+) 1293 WP_015383547.1 gephyrin-like molybdotransferase Glp -
  ABA10_RS07835 (ABA10_07835) mobB 1492505..1493026 (+) 522 WP_003232370.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=146734 ABA10_RS07810 WP_003232378.1 1487847..1488422(+) (rok) [Bacillus subtilis strain UD1022]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=146734 ABA10_RS07810 WP_003232378.1 1487847..1488422(+) (rok) [Bacillus subtilis strain UD1022]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACTACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACGTTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment