Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   ABA10_RS05715 Genome accession   NZ_CP011534
Coordinates   1105785..1106363 (+) Length   192 a.a.
NCBI ID   WP_015483050.1    Uniprot ID   -
Organism   Bacillus subtilis strain UD1022     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1100785..1111363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABA10_RS05695 (ABA10_05695) hemAT 1101296..1102594 (-) 1299 WP_047183552.1 heme-based aerotactic transducer HemAT -
  ABA10_RS05700 (ABA10_05700) comW 1102733..1104262 (-) 1530 WP_047182382.1 FAD-dependent oxidoreductase -
  ABA10_RS05705 (ABA10_05705) yhxC 1104374..1105231 (+) 858 WP_015483049.1 SDR family oxidoreductase -
  ABA10_RS05710 (ABA10_05710) yhzC 1105259..1105492 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  ABA10_RS05715 (ABA10_05715) comK 1105785..1106363 (+) 579 WP_015483050.1 competence transcription factor ComK Regulator
  ABA10_RS05720 (ABA10_05720) yhxD 1106410..1107309 (-) 900 WP_047182383.1 SDR family oxidoreductase -
  ABA10_RS05725 (ABA10_05725) yhjA 1107527..1107796 (+) 270 WP_015483052.1 excalibur calcium-binding domain-containing protein -
  ABA10_RS05730 (ABA10_05730) yhjB 1107840..1109309 (-) 1470 WP_015383277.1 sodium:solute symporter -
  ABA10_RS05735 (ABA10_05735) yhjC 1109306..1109506 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  ABA10_RS05740 (ABA10_05740) - 1109714..1110076 (-) 363 WP_003233132.1 hypothetical protein -
  ABA10_RS05745 (ABA10_05745) yhjE 1110228..1110851 (+) 624 WP_010886465.1 VTT domain-containing protein -
  ABA10_RS05750 (ABA10_05750) lepB 1110853..1111359 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22388.59 Da        Isoelectric Point: 7.2635

>NTDB_id=146721 ABA10_RS05715 WP_015483050.1 1105785..1106363(+) (comK) [Bacillus subtilis strain UD1022]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
SVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=146721 ABA10_RS05715 WP_015483050.1 1105785..1106363(+) (comK) [Bacillus subtilis strain UD1022]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
AGCGTTCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

98.958

100

0.99

Multiple sequence alignment