Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   AYM25_RS07060 Genome accession   NZ_CP014407
Coordinates   1368980..1369603 (-) Length   207 a.a.
NCBI ID   WP_001208760.1    Uniprot ID   Q93SM0
Organism   Staphylococcus aureus strain USA300-SUR12     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1363980..1374603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYM25_RS07035 (AYM25_06800) rpmG 1365556..1365705 (+) 150 WP_001265708.1 50S ribosomal protein L33 -
  AYM25_RS07040 (AYM25_06805) rpsN 1366159..1366428 (+) 270 WP_001085655.1 30S ribosomal protein S14 -
  AYM25_RS07045 (AYM25_06810) guaC 1366585..1367562 (+) 978 WP_000688126.1 GMP reductase -
  AYM25_RS07055 (AYM25_06820) - 1367584..1368600 (+) 1017 WP_001789887.1 CAP domain-containing protein -
  AYM25_RS07060 (AYM25_06825) dinR/lexA 1368980..1369603 (-) 624 WP_001208760.1 transcriptional repressor LexA Regulator
  AYM25_RS07065 (AYM25_06830) sosA 1369746..1369979 (+) 234 WP_000499647.1 DNA damage-induced cell division inhibitor SosA -
  AYM25_RS07070 (AYM25_06835) - 1370115..1370354 (+) 240 WP_000071351.1 DUF896 domain-containing protein -
  AYM25_RS07075 (AYM25_06840) recP/tkt 1370475..1372463 (+) 1989 WP_000481443.1 transketolase Machinery gene
  AYM25_RS07080 (AYM25_06845) - 1372741..1372983 (+) 243 WP_000246909.1 YneF family protein -
  AYM25_RS07085 (AYM25_06850) - 1372970..1373068 (+) 99 WP_001789897.1 hypothetical protein -
  AYM25_RS07090 (AYM25_06855) - 1373162..1373629 (+) 468 WP_000966142.1 CcdC family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23301.46 Da        Isoelectric Point: 4.8811

>NTDB_id=146604 AYM25_RS07060 WP_001208760.1 1368980..1369603(-) (dinR/lexA) [Staphylococcus aureus strain USA300-SUR12]
MRELTKRQSEIYNYIKQVVQTKGYPPSVREIGEAVGLASSSTVHGHLSRLEEKGYIRRDPTKPRAIEIVSDQTNDNINME
ETIHVPVIGKVTAGVPITAVENIEEYFPLPEHLTSTHNSDIFILNVVGDSMIEAGILDGDKVIVRSQTIAENGDIIVAMT
EEDEATVKRFYKEKNRYRLQPENSTMEPIYLDNVAVIGKVIGLYREM

Nucleotide


Download         Length: 624 bp        

>NTDB_id=146604 AYM25_RS07060 WP_001208760.1 1368980..1369603(-) (dinR/lexA) [Staphylococcus aureus strain USA300-SUR12]
ATGAGAGAATTAACAAAACGACAAAGCGAAATATATAACTATATTAAACAAGTTGTTCAAACGAAAGGTTATCCGCCTAG
TGTTCGCGAAATTGGTGAAGCAGTTGGCTTAGCATCCAGTTCAACTGTTCATGGTCACCTTTCACGTCTTGAAGAAAAAG
GCTATATAAGAAGAGATCCAACGAAACCACGTGCTATAGAAATTGTAAGTGATCAAACAAATGATAATATTAATATGGAA
GAAACGATTCATGTGCCAGTTATTGGTAAAGTCACAGCAGGTGTTCCTATTACCGCAGTAGAAAATATTGAAGAATATTT
TCCATTACCTGAACACTTAACATCGACACACAATAGCGACATATTCATATTAAACGTCGTAGGCGACAGTATGATTGAGG
CTGGTATATTAGACGGAGACAAAGTAATTGTTCGCAGTCAAACCATAGCAGAAAATGGAGACATTATTGTTGCTATGACT
GAGGAAGATGAAGCAACTGTCAAACGCTTCTATAAAGAAAAAAATCGTTATCGATTACAACCTGAAAATAGTACAATGGA
GCCAATTTACCTAGACAATGTTGCTGTAATTGGGAAAGTAATTGGTTTGTACCGCGAAATGTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(86-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q93SM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

66.341

99.034

0.657

Multiple sequence alignment