Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   AA076_RS02565 Genome accession   NZ_CP011526
Coordinates   532062..532631 (+) Length   189 a.a.
NCBI ID   WP_001836184.1    Uniprot ID   -
Organism   Staphylococcus aureus strain DSM 20231     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 527062..537631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA076_RS02540 (AA076_02540) cysE 528275..528922 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  AA076_RS02545 (AA076_02545) cysS 528906..530306 (+) 1401 WP_000631963.1 cysteine--tRNA ligase -
  AA076_RS02550 (AA076_02550) - 530299..530703 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  AA076_RS02555 (AA076_02555) rlmB 530711..531457 (+) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  AA076_RS02560 (AA076_02560) - 531457..531981 (+) 525 WP_000664738.1 NYN domain-containing protein -
  AA076_RS02565 (AA076_02565) sigH 532062..532631 (+) 570 WP_001836184.1 sigma-70 family RNA polymerase sigma factor Regulator
  AA076_RS14450 rpmG 532746..532889 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  AA076_RS02570 (AA076_02570) secE 532945..533127 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  AA076_RS02575 (AA076_02575) nusG 533140..533688 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  AA076_RS02580 (AA076_02580) rplK 533869..534291 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  AA076_RS02585 (AA076_02585) rplA 534499..535191 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  AA076_RS02590 (AA076_02590) rplJ 535463..535963 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  AA076_RS02595 (AA076_02595) rplL 536006..536374 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  AA076_RS02600 (AA076_02600) - 536549..537157 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23056.96 Da        Isoelectric Point: 9.4170

>NTDB_id=146589 AA076_RS02565 WP_001836184.1 532062..532631(+) (sigH) [Staphylococcus aureus strain DSM 20231]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCVIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=146589 AA076_RS02565 WP_001836184.1 532062..532631(+) (sigH) [Staphylococcus aureus strain DSM 20231]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGTAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

98.942

100

0.989
  sigH Staphylococcus aureus MW2

97.884

100

0.979

Multiple sequence alignment