Detailed information
Bioinformatically predicted
Overview
| Name | radA | Type | Machinery gene |
| Locus tag | SRB521_RS08315 | Genome accession | NZ_CP011524 |
| Coordinates | 1658207..1659577 (+) | Length | 456 a.a. |
| NCBI ID | WP_116721668.1 | Uniprot ID | A0A2U1CDZ4 |
| Organism | Intestinimonas butyriciproducens strain SRB-521-5-I | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 1650664..1677833 | 1658207..1659577 | within | 0 |
Gene organization within MGE regions
Location: 1650664..1677833
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SRB521_RS08280 | - | 1650664..1651278 (+) | 615 | WP_165366607.1 | VanZ family protein | - |
| SRB521_RS08285 (SRB521_01663) | ligA | 1651256..1653232 (+) | 1977 | WP_075703865.1 | NAD-dependent DNA ligase LigA | - |
| SRB521_RS08290 (SRB521_01664) | - | 1653374..1654735 (+) | 1362 | WP_058117714.1 | radical SAM protein | - |
| SRB521_RS08295 (SRB521_01665) | - | 1654799..1655395 (-) | 597 | WP_033116692.1 | manganese catalase family protein | - |
| SRB521_RS08300 (SRB521_01666) | - | 1655396..1655854 (-) | 459 | WP_058117713.1 | spore coat protein CotJB | - |
| SRB521_RS08305 (SRB521_01667) | - | 1655873..1657417 (+) | 1545 | WP_334260281.1 | MATE family efflux transporter | - |
| SRB521_RS08310 (SRB521_01668) | - | 1657468..1658217 (+) | 750 | WP_116721667.1 | N-acetylmuramoyl-L-alanine amidase | - |
| SRB521_RS08315 (SRB521_01669) | radA | 1658207..1659577 (+) | 1371 | WP_116721668.1 | DNA repair protein RadA | Machinery gene |
| SRB521_RS08320 (SRB521_01670) | - | 1659894..1660136 (-) | 243 | WP_116721669.1 | hypothetical protein | - |
| SRB521_RS08325 | - | 1660225..1660431 (-) | 207 | WP_129868833.1 | hypothetical protein | - |
| SRB521_RS08330 (SRB521_01671) | - | 1660433..1660612 (-) | 180 | WP_033116695.1 | hypothetical protein | - |
| SRB521_RS08335 | - | 1660846..1661439 (-) | 594 | WP_116721670.1 | DUF2726 domain-containing protein | - |
| SRB521_RS08340 | - | 1661464..1661682 (-) | 219 | WP_116721671.1 | helix-turn-helix domain-containing protein | - |
| SRB521_RS08345 | - | 1661814..1662023 (+) | 210 | WP_116721672.1 | hypothetical protein | - |
| SRB521_RS16695 (SRB521_01672) | - | 1662020..1662154 (+) | 135 | WP_257534813.1 | hypothetical protein | - |
| SRB521_RS08350 (SRB521_01673) | - | 1662284..1662532 (+) | 249 | WP_116721673.1 | hypothetical protein | - |
| SRB521_RS08355 (SRB521_01674) | - | 1662543..1662809 (+) | 267 | WP_129868834.1 | hypothetical protein | - |
| SRB521_RS08360 | - | 1663067..1663771 (+) | 705 | WP_165816282.1 | rolling circle replication-associated protein | - |
| SRB521_RS08370 (SRB521_01675) | - | 1663844..1665064 (+) | 1221 | WP_129868836.1 | hypothetical protein | - |
| SRB521_RS08375 (SRB521_01676) | - | 1665064..1665276 (+) | 213 | WP_033116701.1 | hypothetical protein | - |
| SRB521_RS08380 | - | 1665444..1665968 (+) | 525 | WP_129868837.1 | hypothetical protein | - |
| SRB521_RS16130 (SRB521_01678) | - | 1666104..1666253 (+) | 150 | WP_165366608.1 | hypothetical protein | - |
| SRB521_RS16325 (SRB521_01679) | - | 1666270..1666437 (+) | 168 | WP_165816283.1 | hypothetical protein | - |
| SRB521_RS08385 | - | 1666870..1667604 (+) | 735 | WP_116721678.1 | ATP-binding protein | - |
| SRB521_RS08390 (SRB521_01680) | - | 1667691..1668719 (+) | 1029 | WP_075703862.1 | tyrosine-type recombinase/integrase | - |
| SRB521_RS08395 (SRB521_01681) | - | 1668716..1669270 (-) | 555 | WP_075703861.1 | amidase domain-containing protein | - |
| SRB521_RS08400 | - | 1669391..1670044 (+) | 654 | WP_116721679.1 | HAD family hydrolase | - |
| SRB521_RS08405 (SRB521_01683) | - | 1670112..1670741 (-) | 630 | WP_033116705.1 | ECF transporter S component | - |
| SRB521_RS08410 (SRB521_01684) | - | 1670839..1671639 (-) | 801 | WP_242848452.1 | type III pantothenate kinase | - |
| SRB521_RS08415 (SRB521_01685) | leuB | 1671792..1672868 (-) | 1077 | WP_058117708.1 | 3-isopropylmalate dehydrogenase | - |
| SRB521_RS08420 (SRB521_01686) | - | 1672865..1673350 (-) | 486 | WP_075703858.1 | 3-isopropylmalate dehydratase small subunit | - |
| SRB521_RS08425 (SRB521_01687) | leuC | 1673347..1674624 (-) | 1278 | WP_075703857.1 | 3-isopropylmalate dehydratase large subunit | - |
| SRB521_RS08430 (SRB521_01688) | - | 1674723..1675343 (+) | 621 | WP_075703856.1 | Crp/Fnr family transcriptional regulator | - |
| SRB521_RS08435 (SRB521_01689) | - | 1675348..1676169 (-) | 822 | WP_075703855.1 | formate/nitrite transporter family protein | - |
| SRB521_RS08440 (SRB521_01690) | - | 1676423..1676878 (+) | 456 | WP_033116712.1 | DUF6323 family protein | - |
| SRB521_RS08445 (SRB521_01691) | - | 1676871..1677833 (+) | 963 | WP_116721680.1 | DUF6179 domain-containing protein | - |
Sequence
Protein
Download Length: 456 a.a. Molecular weight: 49155.69 Da Isoelectric Point: 5.5780
>NTDB_id=146551 SRB521_RS08315 WP_116721668.1 1658207..1659577(+) (radA) [Intestinimonas butyriciproducens strain SRB-521-5-I]
MRAKMIFYCTECGNETPKWVGKCPACGSWNTMVEQPQESKKKGGPAAQGISSRGSSVSHPKSLAEVETTDELRFPTGLSE
LDRVLGGGAVQGSLVLVGGAPGIGKSTLMLQICDNLCRFSKVLYVSGEESERQIKLRAERLGVRSESLYLLAETSLENIL
ESVHELKPDVLIVDSIQTMYDEEQTTSPGSVGQVKCCTMSLMQLAKGEGITVFVIGHVNKEGSIAGPKVLEHMVDCVLYF
EGEPHMSYRILRAAKNRFGATNEIGVFEMADSGLVEVPNPSETLLEGRPKDTPGTCVTCVMEGNRPVLAEIQALLAPTSF
GNPRRTSNGFDYNRAMLLLAVLEKRGGLMVSSCDAYMNVIGGLYLDEPAADLAAIIAIASSFRDKPVPGDLTAIGEVGLT
GELRSVSALGQRLSEVRRLGFKQCLIPAQKSMKLVEPDGLQLVRVRNIREALSAVL
MRAKMIFYCTECGNETPKWVGKCPACGSWNTMVEQPQESKKKGGPAAQGISSRGSSVSHPKSLAEVETTDELRFPTGLSE
LDRVLGGGAVQGSLVLVGGAPGIGKSTLMLQICDNLCRFSKVLYVSGEESERQIKLRAERLGVRSESLYLLAETSLENIL
ESVHELKPDVLIVDSIQTMYDEEQTTSPGSVGQVKCCTMSLMQLAKGEGITVFVIGHVNKEGSIAGPKVLEHMVDCVLYF
EGEPHMSYRILRAAKNRFGATNEIGVFEMADSGLVEVPNPSETLLEGRPKDTPGTCVTCVMEGNRPVLAEIQALLAPTSF
GNPRRTSNGFDYNRAMLLLAVLEKRGGLMVSSCDAYMNVIGGLYLDEPAADLAAIIAIASSFRDKPVPGDLTAIGEVGLT
GELRSVSALGQRLSEVRRLGFKQCLIPAQKSMKLVEPDGLQLVRVRNIREALSAVL
Nucleotide
Download Length: 1371 bp
>NTDB_id=146551 SRB521_RS08315 WP_116721668.1 1658207..1659577(+) (radA) [Intestinimonas butyriciproducens strain SRB-521-5-I]
ATGAGGGCTAAAATGATTTTTTATTGTACGGAATGCGGCAATGAAACGCCCAAATGGGTAGGGAAGTGCCCTGCCTGCGG
GAGCTGGAACACTATGGTGGAACAACCCCAAGAGTCCAAAAAGAAAGGGGGGCCTGCGGCGCAGGGGATATCTTCCAGAG
GGAGTTCTGTCAGTCATCCTAAATCTCTTGCAGAGGTCGAAACCACAGATGAACTGCGATTCCCCACAGGCCTGAGTGAG
TTGGACCGTGTCTTGGGCGGCGGAGCTGTTCAGGGATCTCTGGTTTTGGTGGGCGGTGCTCCAGGGATTGGAAAGTCTAC
GCTGATGCTTCAAATCTGCGATAATCTCTGCCGCTTTTCCAAAGTGCTCTATGTATCCGGCGAAGAGTCTGAACGGCAGA
TCAAGCTGCGGGCCGAGCGGTTAGGCGTCCGCAGTGAGAGCCTTTATCTGCTGGCTGAAACTAGTCTGGAGAATATTCTG
GAGTCCGTCCATGAGTTAAAACCCGATGTACTTATTGTGGACTCTATTCAGACCATGTACGACGAGGAGCAGACTACTTC
TCCAGGCAGTGTAGGTCAGGTAAAGTGTTGTACCATGTCACTGATGCAGCTCGCAAAAGGAGAAGGAATCACTGTATTCG
TCATTGGACATGTGAACAAGGAGGGCTCCATTGCCGGGCCCAAGGTACTGGAACATATGGTAGACTGTGTTCTATACTTT
GAAGGGGAGCCCCATATGTCCTATCGGATCCTGAGAGCGGCAAAGAATCGGTTCGGAGCTACCAACGAGATCGGTGTTTT
TGAGATGGCTGACAGCGGTCTCGTCGAGGTCCCAAATCCCTCTGAGACGCTATTGGAAGGTCGACCCAAGGACACGCCAG
GAACCTGTGTGACTTGTGTTATGGAGGGAAATCGACCTGTGCTGGCCGAGATTCAGGCGTTGCTTGCCCCTACAAGTTTT
GGAAACCCTCGCAGGACCAGCAATGGGTTTGACTACAACCGCGCGATGCTCTTGCTGGCAGTTCTGGAAAAGAGGGGAGG
GCTCATGGTAAGTTCTTGTGACGCCTATATGAATGTGATAGGTGGACTTTATCTGGATGAACCCGCAGCAGACTTAGCTG
CAATTATTGCCATTGCATCTAGTTTTCGGGACAAGCCTGTACCGGGCGATTTGACTGCAATTGGCGAGGTGGGACTTACC
GGCGAACTCCGTTCCGTCAGCGCCCTGGGACAGCGTCTTTCTGAAGTTAGGCGTTTGGGCTTTAAACAGTGTCTGATTCC
AGCTCAAAAAAGTATGAAACTGGTGGAACCGGATGGGTTACAGCTTGTCCGAGTTCGAAATATTCGGGAGGCGCTCAGCG
CAGTTTTGTAA
ATGAGGGCTAAAATGATTTTTTATTGTACGGAATGCGGCAATGAAACGCCCAAATGGGTAGGGAAGTGCCCTGCCTGCGG
GAGCTGGAACACTATGGTGGAACAACCCCAAGAGTCCAAAAAGAAAGGGGGGCCTGCGGCGCAGGGGATATCTTCCAGAG
GGAGTTCTGTCAGTCATCCTAAATCTCTTGCAGAGGTCGAAACCACAGATGAACTGCGATTCCCCACAGGCCTGAGTGAG
TTGGACCGTGTCTTGGGCGGCGGAGCTGTTCAGGGATCTCTGGTTTTGGTGGGCGGTGCTCCAGGGATTGGAAAGTCTAC
GCTGATGCTTCAAATCTGCGATAATCTCTGCCGCTTTTCCAAAGTGCTCTATGTATCCGGCGAAGAGTCTGAACGGCAGA
TCAAGCTGCGGGCCGAGCGGTTAGGCGTCCGCAGTGAGAGCCTTTATCTGCTGGCTGAAACTAGTCTGGAGAATATTCTG
GAGTCCGTCCATGAGTTAAAACCCGATGTACTTATTGTGGACTCTATTCAGACCATGTACGACGAGGAGCAGACTACTTC
TCCAGGCAGTGTAGGTCAGGTAAAGTGTTGTACCATGTCACTGATGCAGCTCGCAAAAGGAGAAGGAATCACTGTATTCG
TCATTGGACATGTGAACAAGGAGGGCTCCATTGCCGGGCCCAAGGTACTGGAACATATGGTAGACTGTGTTCTATACTTT
GAAGGGGAGCCCCATATGTCCTATCGGATCCTGAGAGCGGCAAAGAATCGGTTCGGAGCTACCAACGAGATCGGTGTTTT
TGAGATGGCTGACAGCGGTCTCGTCGAGGTCCCAAATCCCTCTGAGACGCTATTGGAAGGTCGACCCAAGGACACGCCAG
GAACCTGTGTGACTTGTGTTATGGAGGGAAATCGACCTGTGCTGGCCGAGATTCAGGCGTTGCTTGCCCCTACAAGTTTT
GGAAACCCTCGCAGGACCAGCAATGGGTTTGACTACAACCGCGCGATGCTCTTGCTGGCAGTTCTGGAAAAGAGGGGAGG
GCTCATGGTAAGTTCTTGTGACGCCTATATGAATGTGATAGGTGGACTTTATCTGGATGAACCCGCAGCAGACTTAGCTG
CAATTATTGCCATTGCATCTAGTTTTCGGGACAAGCCTGTACCGGGCGATTTGACTGCAATTGGCGAGGTGGGACTTACC
GGCGAACTCCGTTCCGTCAGCGCCCTGGGACAGCGTCTTTCTGAAGTTAGGCGTTTGGGCTTTAAACAGTGTCTGATTCC
AGCTCAAAAAAGTATGAAACTGGTGGAACCGGATGGGTTACAGCTTGTCCGAGTTCGAAATATTCGGGAGGCGCTCAGCG
CAGTTTTGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radA | Bacillus subtilis subsp. subtilis str. 168 |
54.902 |
100 |
0.553 |
| radA | Streptococcus mitis NCTC 12261 |
50.549 |
99.781 |
0.504 |
| radA | Streptococcus pneumoniae Rx1 |
50.549 |
99.781 |
0.504 |
| radA | Streptococcus pneumoniae D39 |
50.549 |
99.781 |
0.504 |
| radA | Streptococcus pneumoniae R6 |
50.549 |
99.781 |
0.504 |
| radA | Streptococcus pneumoniae TIGR4 |
50.549 |
99.781 |
0.504 |
| radA | Streptococcus mitis SK321 |
50.549 |
99.781 |
0.504 |