Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABE85_RS21875 Genome accession   NZ_CP011514
Coordinates   4973075..4974433 (+) Length   452 a.a.
NCBI ID   WP_067279669.1    Uniprot ID   A0A1A9HR88
Organism   Mitsuaria sp. 7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4968075..4979433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABE85_RS21855 (ABE85_21870) - 4968782..4969639 (+) 858 WP_082938837.1 PEP-CTERM sorting domain-containing protein -
  ABE85_RS21860 (ABE85_21875) - 4969646..4970530 (-) 885 WP_197507113.1 DMT family transporter -
  ABE85_RS21865 (ABE85_21880) - 4970676..4971308 (-) 633 WP_067279663.1 LysE family transporter -
  ABE85_RS21870 (ABE85_21885) - 4971444..4972910 (+) 1467 WP_067279666.1 sodium:solute symporter -
  ABE85_RS21875 (ABE85_21890) radA 4973075..4974433 (+) 1359 WP_067279669.1 DNA repair protein RadA Machinery gene
  ABE85_RS21880 (ABE85_21895) - 4974548..4974955 (+) 408 WP_067279671.1 hypothetical protein -
  ABE85_RS21885 (ABE85_21900) - 4975008..4975931 (+) 924 WP_067279673.1 branched-chain amino acid transaminase -
  ABE85_RS21890 (ABE85_21905) - 4975998..4976216 (+) 219 WP_067279675.1 zinc-finger domain-containing protein -
  ABE85_RS21895 (ABE85_21910) - 4976280..4976741 (+) 462 WP_067279692.1 nuclear transport factor 2 family protein -
  ABE85_RS21900 (ABE85_21915) - 4976753..4977775 (+) 1023 WP_067279694.1 YheT family hydrolase -
  ABE85_RS21905 (ABE85_21920) - 4977834..4978373 (+) 540 WP_067279703.1 DUF2946 family protein -
  ABE85_RS21910 (ABE85_21925) - 4978459..4979067 (-) 609 WP_067279707.1 cytochrome c5 family protein -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 47722.04 Da        Isoelectric Point: 7.1115

>NTDB_id=146506 ABE85_RS21875 WP_067279669.1 4973075..4974433(+) (radA) [Mitsuaria sp. 7]
MAAQKSHYVCSECGATSAKWLGRCPSCSAWNTLVETAAEPAAGKNRFQALARSQPVATLSEIEARDFERTPTSLEELDRV
LGGGIVTGGVVLIGGDPGIGKSTLLLQAVDALSRQMKVLYVTGEESGAQVAMRSRRLGLDGSQVRVLAEIGLEKILATIE
VEQPDFCVIDSIQTMYSEQLSSAPGSVAQVRECAAQLTRTAKSGGCAMVLVGHVTKEGALAGPRVLEHIVDTVLYFEGDT
HSSYRLVRAIKNRFGAVNEIGVFAMTEKGLKGVSNPSAIFLSTHGEPVPGSCVLVTLEGTRPLLVELQALVDGGGPSPRR
LSVGLDRDRLAMLLAVLHRHAGVATMDQDVFVNAVGGVRISEPAADLAVLLAIQSSLRGKPLPKGFFAFGEVGLAGEVRP
APRGQERLKEAAKLGFSIAVVPQANAPKKPIDGLTVHPVARIEDAIEILRAM

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=146506 ABE85_RS21875 WP_067279669.1 4973075..4974433(+) (radA) [Mitsuaria sp. 7]
ATGGCTGCTCAGAAATCCCATTACGTCTGCTCCGAATGTGGCGCCACCAGCGCCAAATGGCTGGGCCGCTGCCCGTCCTG
CAGTGCCTGGAACACCCTGGTCGAAACCGCCGCCGAGCCCGCCGCCGGCAAGAACCGCTTCCAGGCGCTGGCCCGCAGCC
AGCCCGTCGCGACGCTGTCCGAGATCGAGGCCCGCGACTTCGAACGCACGCCCACTTCGCTGGAGGAACTGGACCGCGTG
CTGGGCGGCGGCATCGTCACCGGCGGCGTGGTGCTGATCGGCGGCGACCCGGGCATCGGCAAGTCGACGCTGCTGCTGCA
GGCCGTCGACGCGCTGTCCCGCCAGATGAAGGTGCTCTACGTCACCGGCGAGGAATCCGGCGCGCAGGTCGCGATGCGTT
CCCGTCGCCTGGGCCTGGACGGCTCCCAGGTGCGCGTGCTGGCCGAGATCGGCCTGGAGAAGATCCTGGCCACCATCGAG
GTGGAGCAGCCCGATTTCTGCGTCATCGACTCCATCCAGACGATGTACTCCGAGCAGCTGTCCTCGGCGCCCGGGTCGGT
CGCGCAGGTTCGCGAATGCGCCGCGCAGCTGACCCGCACCGCCAAGTCCGGCGGCTGCGCGATGGTGCTGGTCGGCCACG
TGACCAAGGAAGGCGCGCTGGCCGGCCCGCGCGTGCTGGAACACATCGTCGACACCGTCCTCTACTTCGAGGGCGACACC
CACAGCAGTTACCGGCTGGTGCGCGCGATCAAGAACCGCTTCGGCGCGGTCAACGAGATCGGCGTCTTCGCCATGACCGA
GAAGGGCCTGAAGGGCGTCTCCAATCCGAGCGCCATCTTCCTGTCCACGCACGGCGAGCCGGTGCCCGGCTCCTGCGTGC
TGGTCACGCTGGAGGGCACGCGGCCGCTGCTGGTGGAACTGCAGGCGCTGGTGGACGGCGGCGGACCCAGCCCGCGCCGG
CTGTCCGTGGGCCTGGACCGGGACCGGCTCGCGATGCTGCTGGCGGTGCTGCACCGCCACGCGGGCGTGGCGACGATGGA
CCAGGACGTCTTCGTCAACGCCGTCGGCGGCGTGCGCATCAGCGAGCCGGCGGCCGACCTGGCCGTGCTGCTCGCCATCC
AGAGCTCGCTGCGCGGCAAGCCGCTGCCCAAGGGCTTCTTCGCCTTCGGCGAGGTCGGCCTGGCCGGCGAGGTCCGTCCC
GCGCCGCGCGGCCAGGAGCGGCTGAAGGAAGCGGCCAAGCTGGGCTTCTCGATCGCGGTCGTGCCGCAGGCCAACGCGCC
GAAGAAACCGATCGACGGGCTGACGGTCCACCCGGTCGCCCGCATCGAGGACGCCATCGAGATCCTGCGCGCGATGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(60-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A9HR88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.238

100

0.485
  radA Streptococcus pneumoniae Rx1

47.619

97.566

0.465
  radA Streptococcus pneumoniae D39

47.619

97.566

0.465
  radA Streptococcus pneumoniae TIGR4

47.619

97.566

0.465
  radA Streptococcus pneumoniae R6

47.619

97.566

0.465
  radA Streptococcus mitis NCTC 12261

46.563

99.779

0.465
  radA Streptococcus mitis SK321

47.727

97.345

0.465

Multiple sequence alignment