Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ABE82_RS21610 Genome accession   NZ_CP011512
Coordinates   5011131..5012084 (-) Length   317 a.a.
NCBI ID   WP_023990357.1    Uniprot ID   -
Organism   Paenibacillus peoriae strain HS311     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5006131..5017084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABE82_RS21585 (ABE82_21585) - 5006477..5007388 (-) 912 WP_053326119.1 aldo/keto reductase -
  ABE82_RS21590 (ABE82_21590) - 5007669..5008412 (-) 744 WP_053326120.1 alpha/beta hydrolase-fold protein -
  ABE82_RS21595 (ABE82_21595) - 5008446..5009426 (-) 981 WP_028541805.1 siderophore ABC transporter substrate-binding protein -
  ABE82_RS21600 (ABE82_21600) - 5009439..5010197 (-) 759 WP_053326121.1 ABC transporter ATP-binding protein -
  ABE82_RS21605 (ABE82_21605) - 5010191..5011141 (-) 951 WP_053326122.1 iron chelate uptake ABC transporter family permease subunit -
  ABE82_RS21610 (ABE82_21610) ceuB 5011131..5012084 (-) 954 WP_023990357.1 ABC transporter permease Machinery gene
  ABE82_RS21615 (ABE82_21615) - 5012413..5013090 (+) 678 WP_028541801.1 response regulator transcription factor -
  ABE82_RS21620 (ABE82_21620) - 5013087..5014004 (+) 918 WP_028541800.1 HAMP domain-containing sensor histidine kinase -
  ABE82_RS21625 (ABE82_21625) - 5014113..5014790 (+) 678 WP_023990360.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34746.75 Da        Isoelectric Point: 9.9012

>NTDB_id=146491 ABE82_RS21610 WP_023990357.1 5011131..5012084(-) (ceuB) [Paenibacillus peoriae strain HS311]
MKLRYLILAFLVLAFASVFIGVHDVTPLDVFHLTNDQAQVLLISRFPRLISIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGAAGFWTKMLTAFGFALGGTLIFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QGISSWMQGDFSLIMSGRYEMLYLSIPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALVSSVVILTVGT
IPFLGLVVPNLVSMYMGDNLKKSLAHTAILGAVFVLFCDILGRVIIYPYEISVGLTVGVIGSALFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=146491 ABE82_RS21610 WP_023990357.1 5011131..5012084(-) (ceuB) [Paenibacillus peoriae strain HS311]
ATGAAATTGCGTTATTTAATACTGGCTTTTCTGGTACTGGCCTTCGCCTCGGTTTTTATCGGTGTTCATGATGTAACTCC
ACTTGATGTGTTCCACTTAACCAACGATCAGGCGCAGGTACTCCTGATTAGCAGATTCCCACGATTGATCAGTATCATTA
TCGCAGGGGCGAGTATGAGTATCTGTGGGCTCATTATGCAGCAGCTTACCCGGAACCGATTTGTATCTCCCACCACTGCA
GGGACGATGGATGCGGCACGATTGGGTGTGCTGATGGCTATTATGGTGTTTGGAGCAGCAGGATTTTGGACGAAGATGCT
GACGGCTTTCGGATTTGCTCTAGGGGGAACACTGATTTTCATGAAAATACTGGATAAAATCCGTTTCAAGGACCCGGTAT
TTATCCCGCTTGTCGGTTTGATGTTTGGAGGCATTTTAAATTCGGTAACGACCTTTTTTGCTTACAAATACAATCTGATC
CAGGGCATTTCTTCGTGGATGCAGGGAGACTTTTCTCTAATCATGAGTGGTCGCTACGAGATGCTATATCTTAGTATTCC
TTTGGTTGCGTTGGCGTACATATATGCGAATCGTTTTACAATTGCAGGCATGGGTGAGGATTTTGCGGCCAACTTGGGTG
TACATTACAAGCGCACCGTCAATGTCGGTTTGGTGATCGTGGCTTTGGTTTCTTCTGTTGTCATCTTAACGGTCGGAACG
ATTCCCTTTTTGGGGCTGGTTGTACCCAATCTGGTCAGCATGTATATGGGGGATAATCTGAAAAAAAGCCTGGCCCATAC
AGCGATCTTGGGCGCCGTCTTTGTGCTGTTTTGCGATATTTTGGGACGGGTGATCATTTATCCGTATGAAATTTCTGTAG
GGCTTACGGTTGGTGTGATCGGGAGCGCGTTGTTTTTGTATTTGCTGCTGAGGAGAAGGGCTTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.111

99.369

0.508

Multiple sequence alignment