Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ABD05_RS03990 Genome accession   NZ_CP011503
Coordinates   860331..861839 (+) Length   502 a.a.
NCBI ID   WP_047899049.1    Uniprot ID   -
Organism   Burkholderia pyrrocinia strain DSM 10685     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 855331..866839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABD05_RS03965 (ABD05_03965) kdsD 856574..857557 (+) 984 WP_047899044.1 arabinose 5-phosphate isomerase KdsD -
  ABD05_RS03970 (ABD05_03970) - 857557..858093 (+) 537 WP_047899045.1 KdsC family phosphatase -
  ABD05_RS03975 (ABD05_03975) lptC 858097..858711 (+) 615 WP_047899046.1 LPS export ABC transporter periplasmic protein LptC -
  ABD05_RS03980 (ABD05_03980) lptA 858732..859397 (+) 666 WP_047899047.1 lipopolysaccharide transport periplasmic protein LptA -
  ABD05_RS03985 (ABD05_03985) lptB 859394..860170 (+) 777 WP_047899048.1 LPS export ABC transporter ATP-binding protein -
  ABD05_RS03990 (ABD05_03990) rpoN/rpoN1 860331..861839 (+) 1509 WP_047899049.1 RNA polymerase factor sigma-54 Machinery gene
  ABD05_RS03995 (ABD05_03995) hpf 861997..862356 (+) 360 WP_006477786.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ABD05_RS04000 (ABD05_04000) - 862553..863065 (+) 513 WP_039346503.1 PTS sugar transporter subunit IIA -
  ABD05_RS04005 (ABD05_04005) hprK 863195..864163 (+) 969 WP_006483133.1 HPr(Ser) kinase/phosphatase -
  ABD05_RS04010 (ABD05_04010) rapZ 864239..865147 (+) 909 WP_047899050.1 RNase adapter RapZ -
  ABD05_RS04015 (ABD05_04015) - 865175..865810 (+) 636 WP_047899051.1 LON peptidase substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 54829.90 Da        Isoelectric Point: 4.9300

>NTDB_id=146394 ABD05_RS03990 WP_047899049.1 860331..861839(+) (rpoN/rpoN1) [Burkholderia pyrrocinia strain DSM 10685]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVAMAVAQNPLLENDDEWIASPLRVAADGSLIAQTPPGQNTDPAP
ANSGSSTSGDRAERDERAGADDYDGYGSGDGNDGPQWNLDEFGRSSGASDDDDLPPLQVQEAATSLRDHLSAQLRVTQAS
PRDRALVMFLIESLDDDGYLTATLDEVLADLPSELEIDCDELNAALALLHSFDPAGVGARSASECLKLQLLRLDPSPTRT
LALEIVSQHLELLAARDFTRLRKHLKASDDALRDAHALIRSLEPFPGAAYGKAEADYVVPDIIVKKAGQGWLAELNPEVV
PRLRINNLYANILRNSRGDPSAGSLKQQLQEARWLIKNIQQRFDTILRVAQAIVERQKNFFAHGEIAMRPLVLREIADTL
GLHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDPKSPLSDSRIAELLAEQGFVVA
RRTVAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=146394 ABD05_RS03990 WP_047899049.1 860331..861839(+) (rpoN/rpoN1) [Burkholderia pyrrocinia strain DSM 10685]
ATGAAAGCCAGCCTTCAACTCCGCCTGTCGCAACATCTGGCGCTGACGCCCCAGCTACAGCAGTCGATCCGGCTCCTGCA
GTTGTCGACGCTCGAATTGCAGCAGGAAGTCGCGATGGCCGTCGCGCAGAACCCGCTGCTCGAGAACGACGACGAATGGA
TCGCGAGCCCGCTGCGCGTCGCCGCGGACGGATCGCTGATCGCGCAGACACCTCCCGGCCAGAACACCGATCCGGCCCCG
GCAAACAGCGGCAGCAGCACGTCGGGCGATCGCGCGGAGCGCGACGAGCGGGCCGGTGCCGACGACTACGACGGTTATGG
GTCCGGCGACGGCAACGACGGCCCGCAATGGAATCTCGACGAATTCGGCCGCTCGAGCGGCGCGTCCGACGACGACGACC
TCCCGCCGCTGCAGGTGCAGGAAGCCGCGACGTCGCTGCGCGACCACCTGTCCGCGCAGTTGCGCGTCACGCAGGCCAGC
CCGCGCGATCGCGCGCTCGTGATGTTCCTGATCGAATCGCTCGACGACGACGGCTACCTGACCGCCACGCTCGACGAAGT
GCTCGCCGACCTGCCGTCCGAGCTGGAGATCGACTGCGACGAACTGAACGCGGCGCTCGCGCTGCTGCACAGCTTCGACC
CGGCCGGGGTCGGCGCCCGCTCGGCATCCGAATGCCTGAAGCTGCAGTTGCTGCGCCTTGATCCGTCACCGACGCGCACG
CTCGCGCTCGAGATCGTGTCGCAGCATCTCGAACTGCTCGCCGCACGCGACTTCACGCGGTTGCGCAAGCACCTGAAGGC
GAGCGACGACGCGCTGCGCGACGCGCACGCGCTGATCCGCTCGCTGGAGCCGTTCCCCGGCGCCGCGTACGGCAAGGCCG
AGGCCGACTACGTCGTGCCCGACATCATCGTGAAGAAGGCCGGCCAGGGATGGCTCGCGGAGCTCAATCCGGAGGTCGTG
CCGCGCCTGCGGATCAACAACCTCTACGCGAACATCCTGCGCAACAGCCGCGGCGATCCATCCGCCGGTTCGCTGAAGCA
GCAGCTCCAGGAAGCACGCTGGCTGATCAAGAACATCCAGCAGCGTTTCGACACGATCCTGCGTGTCGCGCAGGCTATTG
TCGAGCGTCAGAAGAATTTCTTTGCGCACGGTGAAATTGCCATGCGCCCCTTGGTTTTGCGGGAAATAGCTGATACGCTG
GGCCTACACGAGTCGACTGTCAGCCGTGTGACAACAGGCAAGTACATGCTGACCCCGTTCGGGACGCTTGAATTTAAGTA
CTTCTTCGGATCACACGTTTCAACCGACACCGGTGGCGCCGCCTCGTCGACCGCCATCCGAGCCCTGATCAAGCAACTGA
TAGGAGCTGAAGACCCAAAATCGCCACTTTCGGACAGCCGCATTGCCGAGCTGCTGGCAGAACAGGGTTTCGTAGTCGCG
CGCCGCACGGTTGCCAAATATCGCGAAGCCCTCAAGATCCCGGCAGTGAATCTGCGCAAGTCTCTTTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(345-500)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(138-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

68.379

100

0.689

Multiple sequence alignment