Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   AA974_RS01485 Genome accession   NZ_CP011487
Coordinates   303593..304000 (+) Length   135 a.a.
NCBI ID   WP_064433118.1    Uniprot ID   -
Organism   Helicobacter pylori strain PNG84A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 298593..309000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA974_RS01450 (AA974_01470) - 298766..299704 (-) 939 WP_064433113.1 tetraacyldisaccharide 4'-kinase -
  AA974_RS01455 (AA974_01475) - 299701..300483 (-) 783 WP_064433114.1 NAD+ synthase -
  AA974_RS01465 (AA974_01485) ilvC 300732..301724 (+) 993 WP_064434040.1 ketol-acid reductoisomerase -
  AA974_RS01470 (AA974_01490) minD 301748..302554 (+) 807 WP_064433115.1 septum site-determining protein MinD -
  AA974_RS01475 (AA974_01495) minE 302551..302784 (+) 234 WP_064433116.1 cell division topological specificity factor MinE -
  AA974_RS01480 (AA974_01500) dprA 302796..303596 (+) 801 WP_064433117.1 DNA-processing protein DprA Machinery gene
  AA974_RS01485 (AA974_01505) dprB 303593..304000 (+) 408 WP_064433118.1 Holliday junction resolvase RuvX Machinery gene
  AA974_RS01490 (AA974_01510) - 304171..304476 (+) 306 WP_064433119.1 hypothetical protein -
  AA974_RS01495 (AA974_01515) - 304460..305026 (+) 567 WP_064433120.1 hypothetical protein -
  AA974_RS01500 (AA974_01520) - 305185..306066 (-) 882 WP_064433121.1 RluA family pseudouridine synthase -
  AA974_RS01505 (AA974_01525) recJ 306066..307616 (-) 1551 WP_064433122.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15453.08 Da        Isoelectric Point: 10.1867

>NTDB_id=146298 AA974_RS01485 WP_064433118.1 303593..304000(+) (dprB) [Helicobacter pylori strain PNG84A]
MILACDVGLKRIGIAALLNGVILPLEAILRRNRNQAARDLSDLLKEKNIQVLVVGKPHESYANTRARIEHFIKFVDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKNKR

Nucleotide


Download         Length: 408 bp        

>NTDB_id=146298 AA974_RS01485 WP_064433118.1 303593..304000(+) (dprB) [Helicobacter pylori strain PNG84A]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGCACTTTTAAACGGCGTTATCTTGCCATTAGAAGC
GATTTTACGCCGCAACAGGAATCAGGCCGCTAGGGATTTGAGCGATTTATTAAAGGAAAAAAACATTCAAGTGCTAGTGG
TGGGCAAGCCCCATGAAAGCTATGCAAATACCCGTGCACGCATTGAGCATTTTATCAAGTTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGCAGGATCTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAACA
AGCGATGA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.737

98.519

0.933

Multiple sequence alignment