Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   AA977_RS06990 Genome accession   NZ_CP011486
Coordinates   1466060..1467376 (+) Length   438 a.a.
NCBI ID   WP_064435094.1    Uniprot ID   -
Organism   Helicobacter pylori strain K26A1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1461060..1472376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA977_RS06970 (AA977_07060) crdR 1461385..1462026 (+) 642 WP_064435090.1 copper response regulator transcription factor CrdR -
  AA977_RS06975 (AA977_07065) crdS 1462007..1463194 (+) 1188 WP_154811957.1 copper-sensing histidine kinase CrdS -
  AA977_RS06980 (AA977_07070) - 1463197..1464591 (+) 1395 WP_064435092.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  AA977_RS06985 (AA977_07075) - 1464603..1466063 (+) 1461 WP_064435093.1 replicative DNA helicase -
  AA977_RS06990 (AA977_07080) comEC/comE3 1466060..1467376 (+) 1317 WP_064435094.1 ComEC/Rec2 family competence protein Machinery gene
  AA977_RS06995 (AA977_07085) mqnP 1467488..1468330 (+) 843 WP_253764826.1 menaquinone biosynthesis prenyltransferase MqnP -
  AA977_RS07000 (AA977_07090) - 1468323..1468817 (+) 495 WP_064435096.1 hypothetical protein -
  AA977_RS07005 (AA977_07095) - 1468830..1469336 (+) 507 WP_064435097.1 hypothetical protein -
  AA977_RS07010 (AA977_07100) - 1469330..1470133 (+) 804 WP_064435098.1 phosphatidylserine decarboxylase -
  AA977_RS07015 (AA977_07105) nadA 1470123..1471133 (+) 1011 WP_064435099.1 quinolinate synthase NadA -
  AA977_RS07020 (AA977_07110) nadC 1471133..1471954 (+) 822 WP_064435100.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 438 a.a.        Molecular weight: 50504.54 Da        Isoelectric Point: 9.7321

>NTDB_id=146289 AA977_RS06990 WP_064435094.1 1466060..1467376(+) (comEC/comE3) [Helicobacter pylori strain K26A1]
MKDKTFQGAFELLSTPKEYLWCGVVLSLLFAINLYVEYLNYQKLDFSKPTSLDAQILLQYPKTNNQKSYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAHFFGKIKPCSFLESLKSCFFQTFSFSLTRKHDFKSYLRHLIDSVHENALVSNLYRALFIGDSL
NKDLRDKANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRILSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTPSFWMRFFQVVSLS
ALVFLNMLIIVHAFFPMFSPYQLFSIPLGLVFIVFFPLSLFLHAVGLGSLLDQMLSMPLIIPTISIFSPLWLLGVHLFLT
ILSARFFKVYLSMHVLSAGFFLYCCYQYIIMPSSMVGG

Nucleotide


Download         Length: 1317 bp        

>NTDB_id=146289 AA977_RS06990 WP_064435094.1 1466060..1467376(+) (comEC/comE3) [Helicobacter pylori strain K26A1]
TTGAAAGACAAAACCTTTCAAGGGGCGTTTGAACTTCTTTCAACCCCCAAAGAATACTTGTGGTGTGGGGTGGTTTTAAG
CCTTTTGTTTGCCATTAACCTCTATGTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACCAGTTTGGACG
CTCAAATCTTGTTGCAATACCCTAAAACGAACAACCAAAAATCCTATTTCGTCTTAAAACTCCAATCTAAAGGCATGATT
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCATTTTTTTGGCAAAATCAAGCCTTGCTC
GTTTTTGGAGTCGTTAAAATCATGCTTTTTTCAAACCTTTTCTTTTTCTTTAACACGCAAACATGATTTTAAATCTTACT
TGCGCCACTTGATTGATAGCGTCCATGAAAACGCTTTGGTTAGCAATTTGTATCGAGCGCTTTTTATAGGGGATAGCTTG
AATAAAGATTTAAGAGACAAAGCCAACGCGCTAGGGATCAACCACTTATTAGCCATTAGTGGGTTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTCTTTTATACTCCCTTACAAAAACGCTATTTCCCTTACAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTGTTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGATTTTGAGTTTTAAACTTTTGATTTTAGCATG
CTGTATCGCTATCGCTCTGCTTCCTAAATTGCTCTTTAGCGTGGGGTTTTTGCTTTCTGTTTGCGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAAACCCCCTCTTTTTGGATGCGATTTTTTCAAGTTGTAAGCTTGAGC
GCGCTGGTGTTTTTAAACATGCTCATTATTGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTTTTTAGCATTCC
TTTAGGGTTGGTTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCGGTGGGTTTGGGGTCTTTATTGGATCAAA
TGTTAAGCATGCCTTTAATAATCCCCACAATCTCTATTTTTTCGCCCTTATGGCTTTTAGGGGTGCATTTGTTTTTAACG
ATTCTAAGCGCGCGATTTTTTAAAGTCTATTTAAGCATGCATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATGGTAGGGGGTTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-383)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

91.533

99.772

0.913

Multiple sequence alignment