Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   AA977_RS00090 Genome accession   NZ_CP011486
Coordinates   13740..14021 (+) Length   93 a.a.
NCBI ID   WP_020971705.1    Uniprot ID   A0A1A9HAK9
Organism   Helicobacter pylori strain K26A1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8740..19021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA977_RS00070 (AA977_00075) groES 9310..9666 (-) 357 WP_064434100.1 co-chaperone GroES -
  AA977_RS00075 (AA977_00080) dnaG 9945..11624 (+) 1680 WP_064434101.1 DNA primase -
  AA977_RS00080 (AA977_00085) - 11621..12673 (+) 1053 WP_064434102.1 MnmA/TRMU family protein -
  AA977_RS00085 (AA977_00090) - 12766..13593 (+) 828 WP_064434103.1 DUF5718 family protein -
  AA977_RS00090 (AA977_00095) comB2 13740..14021 (+) 282 WP_020971705.1 TrbC/VirB2 family protein Machinery gene
  AA977_RS00095 (AA977_00100) comB3 14021..14284 (+) 264 WP_020971706.1 hypothetical protein Machinery gene
  AA977_RS00100 (AA977_00105) comB4 14286..16649 (+) 2364 WP_064434104.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  AA977_RS00110 (AA977_00110) - 16900..18288 (+) 1389 WP_253764842.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10521.78 Da        Isoelectric Point: 9.1450

>NTDB_id=146269 AA977_RS00090 WP_020971705.1 13740..14021(+) (comB2) [Helicobacter pylori strain K26A1]
MSAHFLKIIFLVGLCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=146269 AA977_RS00090 WP_020971705.1 13740..14021(+) (comB2) [Helicobacter pylori strain K26A1]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCTTGTGTGTTTCCAGCTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTTAAAAGCCCCATCGCTAAGGGGATTTTAATGGTAATCTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGATCGGTGGAAAGAGATTCTATTTACGATCCTTGGCGTGGTGTTTGGAATCTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(5-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A9HAK9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

97.849

100

0.978

Multiple sequence alignment