Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   AA973_RS06145 Genome accession   NZ_CP011485
Coordinates   1259001..1260314 (-) Length   437 a.a.
NCBI ID   WP_064438024.1    Uniprot ID   -
Organism   Helicobacter pylori strain ausabrJ05     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1254001..1265314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA973_RS06115 (AA973_06155) nadC 1254464..1255285 (-) 822 WP_064438018.1 carboxylating nicotinate-nucleotide diphosphorylase -
  AA973_RS06120 (AA973_06160) nadA 1255285..1256295 (-) 1011 WP_064438019.1 quinolinate synthase NadA -
  AA973_RS06125 (AA973_06165) - 1256285..1257088 (-) 804 WP_064438020.1 phosphatidylserine decarboxylase -
  AA973_RS06130 (AA973_06170) - 1257082..1257588 (-) 507 WP_064438021.1 DUF6115 domain-containing protein -
  AA973_RS06135 (AA973_06175) - 1257601..1258095 (-) 495 WP_064438022.1 hypothetical protein -
  AA973_RS06140 (AA973_06180) mqnP 1258088..1258972 (-) 885 WP_064438023.1 menaquinone biosynthesis prenyltransferase MqnP -
  AA973_RS06145 (AA973_06185) comEC/comE3 1259001..1260314 (-) 1314 WP_064438024.1 ComEC/Rec2 family competence protein Machinery gene
  AA973_RS06150 (AA973_06190) - 1260311..1261777 (-) 1467 WP_064438025.1 replicative DNA helicase -
  AA973_RS06155 (AA973_06195) - 1261788..1263182 (-) 1395 WP_064438026.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  AA973_RS06160 (AA973_06200) crdS 1263185..1264387 (-) 1203 WP_080471670.1 copper-sensing histidine kinase CrdS -
  AA973_RS06165 (AA973_06205) crdR 1264353..1264994 (-) 642 WP_064438027.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50341.39 Da        Isoelectric Point: 9.9068

>NTDB_id=146263 AA973_RS06145 WP_064438024.1 1259001..1260314(-) (comEC/comE3) [Helicobacter pylori strain ausabrJ05]
MKDKTFKGAFELLTTPKEYLWCGVILSLLLSLNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIREPLKNLQYRHAQFFGKLKPCSFLESLKSCFFQTYSFSLTRKQDFKSHLRHFIDSAHSNALIGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSMSVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRILSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLMRSFQVISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDHLLNMPLAIPTIFVSSPSWLLGVHLFLT
ILSVRFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=146263 AA973_RS06145 WP_064438024.1 1259001..1260314(-) (comEC/comE3) [Helicobacter pylori strain ausabrJ05]
TTGAAAGATAAAACCTTTAAAGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTGGTGTGGGGTTATTTTAAG
CCTTTTGTTATCACTTAATCTTTATTTAGAATACTTGAATTACCAAAAACTTGATTTTTCAAAACCTACAAGCTTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATT
TTTTATACCACCATTAGAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAACTCAAACCTTGCTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACGCGAAAACAAGATTTTAAATCGCATT
TACGCCATTTCATTGACAGCGCTCATTCAAACGCTTTAATAGGCAATTTGTATCGGGCGTTATTTATAGGGGATAGTTTG
AATAAAGATTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTATTAGCCATTAGCGGGTTTCATTTAGGGATTTT
GAGCATGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACTCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGAGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGATCTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCAATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGATGCGATCTTTTCAAGTCATAAGCTTAAGC
GCGCTCGTGTTTTTGAACATGCTCATTATTGCGCATGCCTTTTTCCCTATGTTTTCGCCTTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGGTTGGGGTCTTTGTTGGATCATC
TTTTAAACATGCCTTTAGCAATCCCTACGATTTTTGTTTCTTCGCCTTCATGGCTTTTAGGGGTGCATTTGTTTTTAACG
ATTTTGAGCGTGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.279

100

0.943

Multiple sequence alignment