Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   AA976_RS06870 Genome accession   NZ_CP011484
Coordinates   1419695..1421008 (-) Length   437 a.a.
NCBI ID   WP_064436912.1    Uniprot ID   -
Organism   Helicobacter pylori strain CC33C     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1414695..1426008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA976_RS06840 (AA976_06875) nadC 1415158..1415979 (-) 822 WP_064436909.1 carboxylating nicotinate-nucleotide diphosphorylase -
  AA976_RS06845 (AA976_06880) nadA 1415979..1416989 (-) 1011 WP_064436910.1 quinolinate synthase NadA -
  AA976_RS06850 (AA976_06885) - 1416979..1417782 (-) 804 WP_064436911.1 phosphatidylserine decarboxylase -
  AA976_RS06855 (AA976_06890) - 1417776..1418282 (-) 507 WP_000953090.1 DUF6115 domain-containing protein -
  AA976_RS06860 (AA976_06895) - 1418295..1418789 (-) 495 WP_050578258.1 hypothetical protein -
  AA976_RS06865 (AA976_06900) mqnP 1418782..1419624 (-) 843 WP_229260726.1 menaquinone biosynthesis prenyltransferase MqnP -
  AA976_RS06870 (AA976_06905) comEC/comE3 1419695..1421008 (-) 1314 WP_064436912.1 ComEC/Rec2 family competence protein Machinery gene
  AA976_RS06875 (AA976_06910) - 1421005..1422465 (-) 1461 WP_064436913.1 replicative DNA helicase -
  AA976_RS06880 (AA976_06915) - 1422476..1423870 (-) 1395 WP_064436914.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  AA976_RS06885 (AA976_06920) crdS 1423873..1425075 (-) 1203 WP_080471287.1 copper-sensing histidine kinase CrdS -
  AA976_RS06890 (AA976_06925) crdR 1425041..1425682 (-) 642 WP_064436916.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50146.02 Da        Isoelectric Point: 9.8459

>NTDB_id=146244 AA976_RS06870 WP_064436912.1 1419695..1421008(-) (comEC/comE3) [Helicobacter pylori strain CC33C]
MKDKTFQGAFELLATPKEYSWCGVILSLLLAINLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHLRHFIDSAHSNALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTLLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRILSFKLLVLACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQIFFKDSSFFKRSFQAIALS
VLVFLNMLIVAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDNVLSMPLTIPTISVPSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSMGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=146244 AA976_RS06870 WP_064436912.1 1419695..1421008(-) (comEC/comE3) [Helicobacter pylori strain CC33C]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATACTCATGGTGTGGGGTTATTTTAAG
CCTTTTGTTGGCGATTAACCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTATTGCAATACCCTAAAACGAAAGATCAAAAAACCTATTTTGTCTTAAAGCTCCAATCTAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCACGCGCAATTTTTTGGCAAGATCAAGCCTTGCTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATT
TGCGCCATTTCATTGACAGCGCTCACTCCAACGCTTTGGTGGGTAATTTGTATCGAGCGCTTTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTTCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCTCTTACAAAAACGCTATTTCCCTTACAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTGGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGATCCTAAGTTTTAAGCTTTTGGTTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTCTTAAAACACACTCAAATTTTTTTTAAAGATTCTTCTTTTTTCAAGCGATCGTTTCAAGCGATCGCTTTAAGC
GTGTTAGTGTTTTTGAACATGCTCATTGTTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGCTTATTCTTGCATGCGGTGGGTTTAGGGTCTTTGTTGGATAACG
TTCTAAGCATGCCTTTAACCATCCCCACGATTTCGGTTCCTTCGCCTTTATGGCTTTTAGGGGCGCATTTGTTTTTAACG
ATTTTGAGTGCGCGTTTTTTTAAGGTTTATTTAAGCATGAATGTTTTGAGTATGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-371)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.279

100

0.943

Multiple sequence alignment