Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   EE66_RS07710 Genome accession   NZ_CP011483
Coordinates   1578976..1580289 (+) Length   437 a.a.
NCBI ID   WP_064431544.1    Uniprot ID   -
Organism   Helicobacter pylori strain DU15     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1573976..1585289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EE66_RS07690 (EE66_07700) crdR 1574302..1574943 (+) 642 WP_064431541.1 copper response regulator transcription factor CrdR -
  EE66_RS07695 (EE66_07705) crdS 1574909..1576111 (+) 1203 WP_082231473.1 copper-sensing histidine kinase CrdS -
  EE66_RS07700 (EE66_07710) - 1576114..1577508 (+) 1395 WP_064431542.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  EE66_RS07705 (EE66_07715) - 1577519..1578979 (+) 1461 WP_064431543.1 replicative DNA helicase -
  EE66_RS07710 (EE66_07720) comEC/comE3 1578976..1580289 (+) 1314 WP_064431544.1 ComEC/Rec2 family competence protein Machinery gene
  EE66_RS07715 (EE66_07725) mqnP 1580318..1581202 (+) 885 WP_000913963.1 menaquinone biosynthesis prenyltransferase MqnP -
  EE66_RS07720 (EE66_07730) - 1581195..1581689 (+) 495 WP_064431545.1 hypothetical protein -
  EE66_RS07725 (EE66_07735) - 1581702..1582205 (+) 504 WP_000953117.1 hypothetical protein -
  EE66_RS07730 (EE66_07740) - 1582202..1583008 (+) 807 WP_064431546.1 phosphatidylserine decarboxylase -
  EE66_RS07735 (EE66_07745) nadA 1582995..1584005 (+) 1011 WP_064431547.1 quinolinate synthase NadA -
  EE66_RS07740 (EE66_07750) nadC 1584005..1584826 (+) 822 WP_064431548.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50148.12 Da        Isoelectric Point: 9.8368

>NTDB_id=146227 EE66_RS07710 WP_064431544.1 1578976..1580289(+) (comEC/comE3) [Helicobacter pylori strain DU15]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLRSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSTLVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
TLVFLNMLIIAHAFFPMFSPYQLFSIPLGLMFIVFFPLSLLLHAVGLGSLLDGILNMPLTIPTISVSSPLWLLGVHLFLT
ILSVRFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=146227 EE66_RS07710 WP_064431544.1 1578976..1580289(+) (comEC/comE3) [Helicobacter pylori strain DU15]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTTAATCTTTATTTAGAATATTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCACAATTTTTTGGCAAAATCAAACCTTGCTC
GTTCTTAGAGTCTTTAAGATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGACAGTGCTCATTCAAGCACTTTAGTGGGTAATTTGTATCGCGCGTTATTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAATGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGCGAGTGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAAGTCATAAGCTTAAGC
ACGCTAGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATGTTTATCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTCTTCGCCTTTATGGCTTTTAGGGGTGCATTTATTTTTAACG
ATTTTGAGTGTGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.279

100

0.943

Multiple sequence alignment