Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AYM20_RS12190 Genome accession   NZ_CP014384
Coordinates   2298848..2299318 (+) Length   156 a.a.
NCBI ID   WP_000164421.1    Uniprot ID   P65329
Organism   Staphylococcus aureus strain USA300-SUR7     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2293848..2304318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYM20_RS12170 (AYM20_11855) coaW 2294157..2294960 (+) 804 WP_000862727.1 type II pantothenate kinase -
  AYM20_RS12175 (AYM20_11860) - 2295090..2295761 (-) 672 WP_000120549.1 DUF2750 domain-containing protein -
  AYM20_RS12180 (AYM20_11865) - 2296160..2297353 (-) 1194 WP_000183726.1 hypothetical protein -
  AYM20_RS12185 (AYM20_11870) - 2297353..2298537 (-) 1185 WP_001291500.1 M20 family metallopeptidase -
  AYM20_RS12190 (AYM20_11875) luxS 2298848..2299318 (+) 471 WP_000164421.1 S-ribosylhomocysteine lyase Regulator
  AYM20_RS12195 (AYM20_11880) - 2299470..2299820 (-) 351 WP_001024035.1 membrane protein -
  AYM20_RS12200 (AYM20_11885) - 2299834..2301135 (-) 1302 WP_001242318.1 pyrimidine-nucleoside phosphorylase -
  AYM20_RS12210 (AYM20_11895) deoC 2301414..2302076 (-) 663 WP_001083316.1 deoxyribose-phosphate aldolase -
  AYM20_RS12215 (AYM20_11900) deoD 2302391..2303101 (+) 711 WP_000160304.1 purine-nucleoside phosphorylase -
  AYM20_RS12220 (AYM20_11905) - 2303222..2303665 (-) 444 WP_000070866.1 Dps family protein -
  AYM20_RS12225 (AYM20_11910) - 2303865..2304278 (-) 414 WP_001123303.1 thiol-disulfide oxidoreductase DCC family protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17513.76 Da        Isoelectric Point: 5.4567

>NTDB_id=146205 AYM20_RS12190 WP_000164421.1 2298848..2299318(+) (luxS) [Staphylococcus aureus strain USA300-SUR7]
MTKMNVESFNLDHTKVVAPFIRLAGTMEGLNGDVIHKYDIRFKQPNKEHMDMPGLHSLEHLMAENIRNHSDKVVDLSPMG
CQTGFYVSFINHDNYDDVLNIVEATLNDVLNATEVPACNEVQCGWAASHSLEGAKTIAQAFLDKRNEWHDVFGTGK

Nucleotide


Download         Length: 471 bp        

>NTDB_id=146205 AYM20_RS12190 WP_000164421.1 2298848..2299318(+) (luxS) [Staphylococcus aureus strain USA300-SUR7]
ATGACAAAAATGAATGTTGAAAGTTTCAATTTAGATCATACTAAGGTGGTTGCCCCATTTATTAGATTAGCGGGAACGAT
GGAAGGATTAAACGGAGATGTCATTCACAAATACGACATTCGTTTCAAACAACCAAACAAAGAACATATGGATATGCCCG
GACTACATTCATTAGAACATTTAATGGCTGAAAATATTAGAAATCATAGTGACAAAGTTGTTGATTTAAGTCCTATGGGT
TGCCAAACTGGTTTCTATGTATCATTTATTAATCATGATAATTATGATGATGTATTAAATATTGTTGAAGCAACTTTAAA
TGATGTGCTAAATGCTACTGAAGTGCCTGCTTGTAATGAAGTACAATGTGGCTGGGCAGCAAGTCATTCATTAGAAGGTG
CTAAAACTATCGCTCAAGCATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(5-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65329

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

44.681

90.385

0.404