Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   AA971_RS06350 Genome accession   NZ_CP011482
Coordinates   1300649..1301962 (-) Length   437 a.a.
NCBI ID   WP_064432597.1    Uniprot ID   -
Organism   Helicobacter pylori strain L7     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1295649..1306962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA971_RS06320 (AA971_06320) nadC 1296113..1296934 (-) 822 WP_064432594.1 carboxylating nicotinate-nucleotide diphosphorylase -
  AA971_RS06325 (AA971_06325) nadA 1296934..1297944 (-) 1011 WP_064432595.1 quinolinate synthase NadA -
  AA971_RS06330 (AA971_06330) - 1297934..1298737 (-) 804 WP_064432596.1 phosphatidylserine decarboxylase -
  AA971_RS06335 (AA971_06335) - 1298734..1299237 (-) 504 WP_000953102.1 DUF6115 domain-containing protein -
  AA971_RS06340 (AA971_06340) - 1299250..1299744 (-) 495 WP_015086273.1 hypothetical protein -
  AA971_RS06345 (AA971_06345) mqnP 1299737..1300578 (-) 842 Protein_1244 menaquinone biosynthesis prenyltransferase MqnP -
  AA971_RS06350 (AA971_06350) comEC/comE3 1300649..1301962 (-) 1314 WP_064432597.1 ComEC/Rec2 family competence protein Machinery gene
  AA971_RS06355 (AA971_06355) - 1301959..1303425 (-) 1467 WP_064432598.1 replicative DNA helicase -
  AA971_RS06360 (AA971_06360) - 1303436..1304830 (-) 1395 WP_064432599.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  AA971_RS06365 (AA971_06365) crdS 1304833..1306035 (-) 1203 WP_080471535.1 copper-sensing histidine kinase CrdS -
  AA971_RS06370 (AA971_06370) crdR 1306001..1306642 (-) 642 WP_064432600.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50156.17 Da        Isoelectric Point: 9.8515

>NTDB_id=146204 AA971_RS06350 WP_064432597.1 1300649..1301962(-) (comEC/comE3) [Helicobacter pylori strain L7]
MKDKTFQGAFELLTTPKEYLVCGVFLSLLLAINLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALAGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTLLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGARLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTPSFLVRSFQVISLS
VLVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLLLHAVGLGSLLDGILNMPLTIPTIFVFSPLWLLGVHLFLT
ILSVRFFKAYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=146204 AA971_RS06350 WP_064432597.1 1300649..1301962(-) (comEC/comE3) [Helicobacter pylori strain L7]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACGACCCCCAAAGAATACCTGGTGTGTGGGGTGTTTTTAAG
CCTTTTGTTGGCAATCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCGACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCACGCGCAATTTTTTGGCAAAATCAAACCCTGCTC
GTTCTTAGAGTCTCTAAAGTCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAGGATTTCAAATCGCATT
GGCGCCATTTCATTGACAGCGCTCATTCAAGCGCTTTAGCGGGCAATTTGTATCGCGCGTTATTTATAGGGGATAGCTTG
AATAAAGATTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCTATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACTCTCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGCAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTCTTAAAACACACTCAAGCCTTTTTTAAAACCCCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGC
GTATTGGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACGATTTTTGTTTTTTCGCCTTTATGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTCTAAGCGTGCGTTTTTTTAAAGCTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTGGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.737

100

0.947

Multiple sequence alignment