Detailed information NTG0146166

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: IMCC21906_RS06375
• Genome accession: NZ_CP011477
• Coordinates: 1394585..1395949 (-)
• Length: 454 a.a.
• NCBI ID: WP_047011466.1
• Uniprot ID: A0A0F7M1N3
• Organism: Spongiibacter sp. IMCC21906
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1389585..1400949

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IMCC21906_RS06360 (IMCC21906_01295)	-	1389731..1390264 (+)	534	WP_052763402.1	PilX N-terminal domain-containing pilus assembly protein	-
IMCC21906_RS06365 (IMCC21906_01296)	-	1390276..1394091 (+)	3816	WP_052763403.1	pilus assembly protein	-
IMCC21906_RS06370 (IMCC21906_01297)	-	1394088..1394540 (+)	453	WP_047011465.1	type IV pilin protein	-
IMCC21906_RS06375 (IMCC21906_01298)	pilR	1394585..1395949 (-)	1365	WP_047011466.1	sigma-54 dependent transcriptional regulator	Regulator
IMCC21906_RS06380 (IMCC21906_01299)	-	1395946..1397544 (-)	1599	WP_047011467.1	PAS domain-containing sensor histidine kinase	-
IMCC21906_RS06385 (IMCC21906_01300)	-	1397758..1399386 (+)	1629	WP_047011468.1	NAD+ synthase	-
IMCC21906_RS06390 (IMCC21906_01301)	-	1399451..1400314 (-)	864	WP_047011469.1	outer membrane protein assembly factor BamD	-

Sequence

Protein

• Length: 454 a.a.
• Molecular weight: 49759.56 Da
• Isoelectric Point: 4.9225

>NTDB_id=146166 IMCC21906_RS06375 WP_047011466.1 1394585..1395949(-) (pilR) [Spongiibacter sp. IMCC21906]
MNSHQQNVLIVDDEPDILELLDITISRMGLNTLTASTVAEALTHLRSQEISLCLTDIKLPDGSGMDIVSAIQACEVPPPV
AVLTAYGSMELAVESLKAGAFDFINKPVSIEQLRNLVKSALRLDNRPPPVEGSKNPRLLGETPAIKTLREQINKLARSQA
PVYISGESGSGKEVVARLIHANGPRRDAPFVPVNCGAIPDELVESEFFGHAKGSFTGAYDHKEGLFEAANGGTLFLDEVA
DLPLNMQVKLLRAIQEKAVRRIGSNQEIPVDVRILSATHRDLSRAVASENFRSDLFYRINVIELQVPSLRSRTSDIPLLA
DFILEKISREWGLTAPALDQTAIKALQSYAFPGNVRELENIIERAATLCDGGKISELDLSLPSANGPLQTSDNASGDSHL
QGASGRLEEYLAEIEKEIISEALENNRWNKTESAKTLGVTFRQFRYKLKKYELD

Nucleotide

• Length: 1365 bp

>NTDB_id=146166 IMCC21906_RS06375 WP_047011466.1 1394585..1395949(-) (pilR) [Spongiibacter sp. IMCC21906]
ATGAATAGCCATCAACAAAACGTTTTAATCGTCGACGACGAACCCGATATCCTCGAGCTTTTAGATATCACCATTAGTCG
CATGGGACTAAACACGCTCACCGCATCTACCGTTGCCGAAGCGCTAACGCACTTACGCAGCCAAGAGATCAGTTTATGTC
TCACCGACATTAAACTGCCTGACGGTTCAGGTATGGATATCGTCAGTGCCATACAAGCGTGTGAGGTGCCGCCACCGGTC
GCAGTACTCACCGCTTACGGCAGCATGGAACTAGCAGTCGAATCATTAAAAGCCGGCGCGTTTGATTTTATAAACAAACC
GGTTTCGATAGAACAATTACGTAATTTAGTTAAATCTGCACTGCGCCTGGATAATCGCCCCCCCCCTGTTGAAGGCAGCA
AAAATCCGCGGTTGTTAGGCGAAACCCCCGCCATCAAAACGCTACGTGAACAGATCAACAAACTCGCTCGAAGCCAAGCG
CCTGTCTATATCAGCGGCGAATCCGGTAGCGGTAAAGAAGTGGTCGCCCGGCTTATCCATGCTAACGGTCCCCGTCGAGA
CGCGCCCTTTGTGCCCGTTAATTGTGGTGCCATTCCCGATGAGCTAGTAGAGAGCGAATTCTTTGGTCATGCAAAAGGCA
GCTTTACCGGCGCCTACGACCACAAAGAAGGCTTATTTGAAGCGGCCAATGGCGGTACCTTGTTCTTAGATGAAGTTGCC
GACCTCCCCCTTAATATGCAGGTAAAACTGCTCAGAGCCATTCAAGAAAAAGCCGTCAGACGCATTGGTTCAAATCAAGA
AATACCGGTCGACGTGCGCATACTTAGCGCCACACACCGCGACCTCAGCCGGGCCGTCGCCTCCGAAAATTTCAGAAGTG
ACCTGTTTTACCGGATTAATGTGATTGAATTACAAGTGCCAAGTTTGCGCAGCCGCACCAGTGATATCCCCTTGCTGGCT
GATTTTATTCTTGAAAAAATCAGTCGTGAATGGGGGCTGACTGCCCCAGCCCTTGATCAGACGGCCATTAAAGCACTGCA
ATCTTATGCGTTTCCGGGAAATGTGCGAGAACTGGAAAACATCATAGAACGGGCTGCCACCCTTTGCGATGGCGGAAAAA
TTTCGGAATTAGACTTATCCCTGCCTAGCGCTAATGGCCCTTTACAGACAAGCGATAACGCAAGTGGTGACTCTCATCTG
CAAGGGGCCAGCGGTCGCCTGGAAGAATATTTAGCTGAAATCGAAAAAGAAATTATTAGCGAAGCACTGGAAAACAACCG
TTGGAACAAAACCGAATCTGCCAAAACACTGGGAGTCACCTTTCGGCAGTTTCGATATAAGTTAAAAAAATACGAGCTGG
ATTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (411-451)

• Sigma-54 interaction domain (Sigma54_activat) (139-305)

• Response regulator receiver domain (Response_reg) (8-117)

3D structure

• AlphaFold DB: A0A0F7M1N3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	59.111	99.119	0.586
pilR	Acinetobacter baumannii strain A118	48.394	100	0.498