Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   VK72_RS22775 Genome accession   NZ_CP011420
Coordinates   5099926..5100879 (-) Length   317 a.a.
NCBI ID   WP_028541802.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain ATCC 15970     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5094926..5105879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VK72_RS22750 (VK72_22315) - 5095272..5096183 (-) 912 WP_075154763.1 aldo/keto reductase -
  VK72_RS22755 (VK72_22320) - 5096464..5097207 (-) 744 WP_053326120.1 alpha/beta hydrolase -
  VK72_RS22760 (VK72_22325) - 5097241..5098221 (-) 981 WP_075154764.1 siderophore ABC transporter substrate-binding protein -
  VK72_RS22765 (VK72_22330) - 5098234..5098992 (-) 759 WP_075154765.1 ABC transporter ATP-binding protein -
  VK72_RS22770 (VK72_22335) - 5098986..5099936 (-) 951 WP_069080667.1 iron chelate uptake ABC transporter family permease subunit -
  VK72_RS22775 (VK72_22340) ceuB 5099926..5100879 (-) 954 WP_028541802.1 ABC transporter permease Machinery gene
  VK72_RS22780 (VK72_22345) - 5101208..5101885 (+) 678 WP_075154766.1 response regulator transcription factor -
  VK72_RS22785 (VK72_22350) - 5101882..5102799 (+) 918 WP_075155086.1 sensor histidine kinase -
  VK72_RS22790 (VK72_22355) - 5102908..5103585 (+) 678 WP_075154767.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34732.72 Da        Isoelectric Point: 9.9012

>NTDB_id=145934 VK72_RS22775 WP_028541802.1 5099926..5100879(-) (ceuB) [Paenibacillus polymyxa strain ATCC 15970]
MKLRYLIVAFLVLAFASVFIGVHDVTPLDVFHLTNDQAQVLLISRFPRLISIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGAAGFWTKMLTAFGFALGGTLIFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QGISSWMQGDFSLIMSGRYEMLYLSIPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALVSSVVILTVGT
IPFLGLVVPNLVSMYMGDNLKKSLAHTAILGAVFVLFCDILGRVIIYPYEISVGLTVGVIGSALFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=145934 VK72_RS22775 WP_028541802.1 5099926..5100879(-) (ceuB) [Paenibacillus polymyxa strain ATCC 15970]
ATGAAATTGCGTTATTTAATAGTGGCTTTTCTGGTACTGGCCTTCGCCTCGGTTTTTATTGGTGTTCATGATGTAACTCC
ACTTGATGTGTTCCACTTAACCAACGATCAGGCGCAGGTACTCCTGATTAGCAGATTCCCACGATTGATCAGTATCATTA
TCGCAGGGGCGAGTATGAGTATCTGTGGGCTCATTATGCAGCAGCTTACCCGGAACCGATTTGTATCTCCCACCACTGCA
GGGACGATGGATGCGGCACGATTGGGTGTGCTGATGGCTATTATGGTGTTTGGAGCAGCAGGATTTTGGACAAAGATGCT
GACGGCTTTCGGATTTGCTCTAGGGGGAACACTGATTTTCATGAAAATACTGGATAAAATCCGTTTCAAGGACCCGGTAT
TTATCCCGCTTGTCGGTTTGATGTTTGGAGGCATTTTAAATTCGGTAACGACCTTTTTTGCTTACAAATACAATCTGATC
CAGGGCATTTCTTCGTGGATGCAGGGAGACTTTTCTCTAATCATGAGTGGTCGCTACGAGATGCTATATCTTAGTATTCC
TTTGGTTGCGTTGGCGTACATATATGCGAATCGTTTTACAATTGCAGGCATGGGTGAGGATTTTGCGGCCAACTTGGGTG
TACATTACAAGCGCACCGTCAATGTCGGTTTGGTGATCGTGGCTTTGGTTTCCTCTGTTGTCATCTTAACGGTCGGGACG
ATTCCCTTTTTGGGGCTGGTTGTACCCAATCTAGTCAGCATGTATATGGGGGATAATCTTAAAAAAAGCCTGGCCCATAC
AGCGATCTTGGGCGCCGTCTTTGTGCTGTTTTGCGATATTTTGGGACGGGTGATCATTTATCCGTATGAAATTTCTGTAG
GGCTTACGGTTGGTGTGATCGGGAGCGCGTTGTTTTTGTATTTGCTGCTGAGGAGAAGGGCTTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.111

99.369

0.508

Multiple sequence alignment