Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   VK72_RS12655 Genome accession   NZ_CP011420
Coordinates   2901210..2903060 (+) Length   616 a.a.
NCBI ID   WP_023988615.1    Uniprot ID   A0A8I1XWC1
Organism   Paenibacillus polymyxa strain ATCC 15970     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2896210..2908060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VK72_RS12635 (VK72_12430) - 2897006..2898171 (+) 1166 Protein_2481 Ger(x)C family spore germination protein -
  VK72_RS12640 (VK72_12435) - 2898180..2898407 (+) 228 WP_226887813.1 hypothetical protein -
  VK72_RS12645 (VK72_12440) - 2898970..2899380 (+) 411 WP_028541283.1 MarR family winged helix-turn-helix transcriptional regulator -
  VK72_RS12650 (VK72_12445) rcrP 2899454..2901217 (+) 1764 WP_023988614.1 ABC transporter ATP-binding protein Regulator
  VK72_RS12655 (VK72_12450) rcrQ 2901210..2903060 (+) 1851 WP_023988615.1 ABC transporter ATP-binding protein Regulator
  VK72_RS12660 (VK72_12455) - 2903180..2903488 (+) 309 WP_023988616.1 hypothetical protein -
  VK72_RS27795 (VK72_12460) - 2903833..2904186 (+) 354 WP_226887812.1 hypothetical protein -
  VK72_RS12670 (VK72_12465) - 2904432..2904851 (+) 420 WP_028541280.1 ester cyclase -
  VK72_RS12675 (VK72_12470) - 2905076..2906466 (-) 1391 Protein_2489 PLP-dependent aminotransferase family protein -
  VK72_RS12680 (VK72_12475) azlC 2906574..2907305 (+) 732 WP_075154205.1 azaleucine resistance protein AzlC -
  VK72_RS12685 (VK72_12480) - 2907286..2907618 (+) 333 WP_023988622.1 branched-chain amino acid transporter permease -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 67804.35 Da        Isoelectric Point: 6.1585

>NTDB_id=145921 VK72_RS12655 WP_023988615.1 2901210..2903060(+) (rcrQ) [Paenibacillus polymyxa strain ATCC 15970]
MDKNEHTVDSQQMKMNQGGPMGKGPAGGKGAGEKANNFKKTISQLVSYSKAYVPMIVLAMVLALVGSTLNVIGPDKLSDI
ANLIQEGIVTGIDVSAVQKIVLVLALLYGFGLIFNYFQGFITATVSQRLTKKMRTELSRKIDHMPLKYFDSTSYGNVLSR
VTNDVDTIGQTLNNSLGTLVGALATFVGALIMMLYTNWIMTITGIVATLIGFCLMSVIMKHSQKYFVAQQAELGQINGHI
EETYAGHNVVKVYNGEQAAKEVFHGINSRLYTNAWKSQFMSGLMMPVMMFIGNFGYVAVCVVGALLVNQQTITIGTIVAF
MVYIRLFTQPLSQLAQAATNLQSAAAASERVFEFLGEEELADERHKTIKMDTAKGDVEFKHVRFGYNTDRMIIKDFSMKA
EAGQKIAIVGPTGAGKTTLVNLLMRFYELNDGEIYIDGTPISQLTRENIHELFCMVLQDTWLFEGTIRDNIVFSKDHVTD
EQVEAASRAVGLHSFIKTLPQGYDTVLDDKANLSAGQKQLITIARAMIEDSPMLILDEATSSVDTRTELLIQQAMDQLTV
GKTSFVIAHRLSTIKNADLILVMKDGDIIEMGNHEELLAKGGFYADLYNSQFEHAS

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=145921 VK72_RS12655 WP_023988615.1 2901210..2903060(+) (rcrQ) [Paenibacillus polymyxa strain ATCC 15970]
ATGGATAAGAATGAACACACCGTCGACAGCCAGCAAATGAAAATGAATCAGGGAGGTCCCATGGGTAAAGGCCCTGCGGG
GGGCAAGGGTGCTGGTGAAAAAGCGAATAATTTTAAAAAGACCATCAGCCAGCTTGTATCCTACAGCAAGGCCTATGTGC
CTATGATTGTACTAGCTATGGTACTGGCCCTGGTCGGCTCCACCCTCAACGTGATTGGCCCGGATAAGCTCAGTGATATT
GCCAACCTGATTCAGGAAGGAATCGTAACCGGGATTGATGTAAGTGCTGTTCAGAAGATTGTTCTTGTATTGGCGCTTTT
ATATGGATTTGGTCTTATCTTTAACTATTTCCAGGGCTTCATTACAGCAACCGTCTCACAGCGTCTTACAAAGAAGATGC
GGACAGAACTGTCTCGAAAAATCGATCATATGCCTTTGAAGTATTTTGACTCTACGAGTTACGGTAATGTGCTTAGCCGC
GTAACCAACGATGTCGATACCATCGGACAAACGTTAAACAACAGTCTCGGCACGCTTGTCGGTGCACTGGCTACCTTTGT
GGGCGCCTTGATTATGATGCTTTATACAAACTGGATCATGACCATTACCGGAATTGTAGCTACGCTGATCGGCTTTTGCC
TGATGAGCGTGATTATGAAGCATTCACAGAAATACTTTGTAGCACAGCAAGCGGAGCTTGGCCAGATCAACGGTCATATT
GAAGAAACCTATGCTGGTCATAACGTAGTCAAGGTATATAACGGGGAACAAGCAGCCAAGGAAGTGTTTCATGGCATTAA
CAGCCGCCTATATACAAATGCATGGAAGTCCCAGTTCATGTCTGGCCTGATGATGCCAGTCATGATGTTCATTGGAAATT
TTGGTTATGTCGCGGTTTGTGTTGTGGGAGCTTTGCTGGTCAACCAACAGACTATAACTATCGGAACTATTGTCGCCTTC
ATGGTGTATATTCGTCTGTTTACACAGCCCTTGTCGCAGCTGGCACAGGCCGCAACCAATCTGCAGTCGGCGGCTGCCGC
CAGTGAACGTGTATTCGAATTTCTGGGTGAAGAAGAATTGGCAGATGAGCGTCACAAGACCATAAAGATGGACACCGCCA
AAGGGGATGTCGAATTCAAACATGTCCGTTTCGGCTATAATACAGATCGTATGATTATCAAGGACTTCTCCATGAAAGCT
GAAGCTGGTCAGAAAATTGCCATTGTTGGTCCGACAGGTGCTGGTAAGACCACGCTCGTGAATTTGCTCATGCGGTTTTA
TGAGCTGAACGATGGAGAAATCTACATTGACGGAACCCCGATTAGCCAATTAACGCGTGAGAATATTCATGAATTATTCT
GTATGGTGCTTCAGGATACCTGGCTGTTCGAAGGAACGATTCGTGACAATATCGTCTTTTCCAAAGATCATGTTACCGAT
GAGCAGGTGGAAGCTGCTAGTAGAGCGGTGGGGCTGCACAGCTTCATTAAAACACTGCCGCAGGGCTATGATACAGTGCT
GGACGACAAAGCCAATCTCTCCGCCGGTCAAAAGCAATTGATTACCATTGCAAGAGCGATGATTGAAGATTCACCCATGC
TCATTCTGGATGAGGCCACAAGCTCGGTTGATACGCGTACGGAATTGCTGATTCAACAAGCGATGGACCAGCTGACTGTG
GGGAAAACCTCCTTTGTGATTGCTCACCGACTTTCGACGATCAAGAATGCGGATCTGATTCTGGTCATGAAGGATGGTGA
CATTATCGAAATGGGTAACCATGAGGAATTGCTGGCTAAAGGCGGCTTCTATGCTGATCTATACAACAGTCAGTTTGAAC
ATGCATCCTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(58-331)

ABC transporter (ABC_tran)

(394-541)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.326

93.669

0.528

Multiple sequence alignment