Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   VK72_RS12650 Genome accession   NZ_CP011420
Coordinates   2899454..2901217 (+) Length   587 a.a.
NCBI ID   WP_023988614.1    Uniprot ID   A0AAJ3J4R6
Organism   Paenibacillus polymyxa strain ATCC 15970     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2894454..2906217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VK72_RS12630 (VK72_12425) - 2895439..2896968 (+) 1530 WP_075154204.1 spore germination protein -
  VK72_RS12635 (VK72_12430) - 2897006..2898171 (+) 1166 Protein_2481 Ger(x)C family spore germination protein -
  VK72_RS12640 (VK72_12435) - 2898180..2898407 (+) 228 WP_226887813.1 hypothetical protein -
  VK72_RS12645 (VK72_12440) - 2898970..2899380 (+) 411 WP_028541283.1 MarR family winged helix-turn-helix transcriptional regulator -
  VK72_RS12650 (VK72_12445) rcrP 2899454..2901217 (+) 1764 WP_023988614.1 ABC transporter ATP-binding protein Regulator
  VK72_RS12655 (VK72_12450) rcrQ 2901210..2903060 (+) 1851 WP_023988615.1 ABC transporter ATP-binding protein Regulator
  VK72_RS12660 (VK72_12455) - 2903180..2903488 (+) 309 WP_023988616.1 hypothetical protein -
  VK72_RS27795 (VK72_12460) - 2903833..2904186 (+) 354 WP_226887812.1 hypothetical protein -
  VK72_RS12670 (VK72_12465) - 2904432..2904851 (+) 420 WP_028541280.1 ester cyclase -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64866.14 Da        Isoelectric Point: 7.8021

>NTDB_id=145920 VK72_RS12650 WP_023988614.1 2899454..2901217(+) (rcrP) [Paenibacillus polymyxa strain ATCC 15970]
MLKIFKYLKKNEWMLVVCSLAFIVVQVWLDLKLPDYMAEITTKLQTEGTPVSELLIPGSYMLFCAVGSMIASIIVGYFAA
KVAAGLAMRLRAMVFDKTLSFSMEEMNNFSTASLITRSTNDVTQIQTVVALGLQVIIKAPILAVWAIVKIADKNWQWTAS
TGAAVAALILMLSVIVVFALPSFQRIQRLTDNLNRVTREHLIGLRVVRAYNADQYQQEKFEQANVELTNTNLFANRLMTM
IGPGMTFIMSGLSVSIYWIGAYLINGAAVPDRITLFSNMVVFSSYAMQVVMAFMMVSMIFILMPRASISAKRIMEVLNTE
SSIVNGHETTGEESVMGQVEFRNVSFKYPDAEEAVLRNISFTAKRGETVAFIGATGSGKTSVINLIPRFYDVTEGEVLVD
GVNVRNYNQQALHNKIGYVPQRAVLFNGTVVSNVSYGDNGRAGASEKLVKEAVGIAQGTEFVEKMDGQYQGRISQGGANV
SGGQKQRLSIARAIYRQPEIYIFDDSFSALDYRTDRILRSALKKETGHATTLIVGQRIGTIKDADRIIVLDQGEIVGSGT
HEELMTNCSTYQEIAYSQLSKEELIHG

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=145920 VK72_RS12650 WP_023988614.1 2899454..2901217(+) (rcrP) [Paenibacillus polymyxa strain ATCC 15970]
ATGCTAAAGATATTCAAATATCTCAAGAAAAATGAATGGATGCTTGTAGTTTGCAGCCTAGCCTTCATCGTTGTGCAGGT
ATGGCTTGATCTGAAGCTACCTGATTATATGGCGGAAATTACGACCAAGCTGCAAACGGAAGGAACGCCTGTGTCCGAAC
TGCTGATTCCCGGCAGTTACATGTTGTTTTGTGCCGTCGGCAGTATGATTGCATCTATTATTGTGGGCTATTTCGCGGCA
AAGGTGGCTGCAGGGCTGGCTATGCGTCTGCGTGCGATGGTCTTTGACAAGACCTTATCCTTTTCGATGGAAGAGATGAA
CAACTTTTCGACGGCAAGCCTCATTACCCGCTCCACGAACGATGTTACGCAGATTCAAACGGTGGTTGCGCTGGGGCTGC
AGGTGATCATCAAGGCACCGATTCTGGCCGTGTGGGCCATTGTGAAGATTGCAGATAAAAACTGGCAGTGGACCGCCTCC
ACAGGAGCGGCCGTGGCTGCTCTGATCCTGATGCTAAGTGTCATTGTTGTTTTCGCTCTTCCAAGTTTCCAGAGAATCCA
GCGTCTCACCGATAATCTGAACAGGGTAACACGTGAGCATCTGATCGGACTTCGGGTAGTACGCGCTTATAATGCAGATC
AGTATCAGCAGGAGAAGTTCGAGCAGGCTAACGTCGAGTTGACGAATACAAACCTGTTTGCGAACCGTTTAATGACGATG
ATTGGCCCAGGTATGACCTTTATTATGTCAGGTCTGAGTGTCTCTATCTATTGGATCGGCGCTTACCTGATTAACGGGGC
GGCCGTACCAGACCGCATCACGCTGTTCTCCAATATGGTCGTATTCTCCTCTTATGCAATGCAGGTGGTTATGGCCTTTA
TGATGGTAAGTATGATATTCATCCTGATGCCTCGCGCCTCGATCTCTGCCAAACGGATCATGGAGGTTTTGAATACCGAA
TCCAGCATCGTTAATGGGCATGAGACGACTGGAGAAGAGAGCGTTATGGGGCAAGTGGAATTCCGTAATGTCAGCTTCAA
ATATCCGGACGCGGAGGAGGCCGTGCTTCGCAACATCAGCTTCACGGCGAAACGAGGCGAGACGGTTGCCTTTATTGGCG
CTACAGGCAGCGGCAAAACCAGCGTGATCAATCTGATTCCCCGTTTCTATGATGTGACCGAGGGAGAGGTACTCGTGGAC
GGTGTGAATGTCAGGAACTATAATCAGCAGGCACTCCATAACAAAATCGGGTATGTTCCTCAGAGAGCTGTACTGTTCAA
CGGTACGGTCGTATCCAACGTTTCGTACGGTGATAACGGAAGAGCAGGAGCTTCGGAGAAACTTGTCAAAGAAGCCGTTG
GTATTGCTCAAGGAACGGAGTTTGTCGAAAAAATGGATGGTCAATATCAGGGTAGAATTTCGCAAGGTGGAGCGAATGTG
TCCGGTGGTCAAAAGCAGCGGCTGTCCATTGCGCGTGCCATCTACCGTCAGCCGGAGATTTATATTTTCGATGATTCCTT
CTCGGCACTAGACTACAGAACAGACCGGATTCTGCGCTCCGCTCTCAAAAAAGAAACCGGCCACGCTACGACACTTATCG
TTGGTCAGCGCATAGGTACGATCAAAGACGCTGATCGGATTATCGTGCTGGACCAGGGAGAGATTGTAGGGAGCGGCACG
CATGAAGAGCTGATGACGAACTGCAGCACCTATCAGGAGATCGCATATTCGCAGCTTTCGAAGGAGGAACTCATACATGG
ATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-292)

ABC transporter (ABC_tran)

(356-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.421

100

0.535

Multiple sequence alignment