Detailed information
Bioinformatically predicted
Overview
| Name | comFC/cflB | Type | Machinery gene |
| Locus tag | AA105_RS03190 | Genome accession | NZ_CP011419 |
| Coordinates | 607223..607888 (+) | Length | 221 a.a. |
| NCBI ID | WP_004194119.1 | Uniprot ID | A0A140EWV9 |
| Organism | Streptococcus suis strain NSUI002 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 602223..612888
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AA105_RS11525 | - | 603236..603427 (+) | 192 | Protein_585 | aquaporin | - |
| AA105_RS03175 (AA105_03180) | - | 603772..604974 (+) | 1203 | WP_009909264.1 | IS110-like element ISSsu7 family transposase | - |
| AA105_RS03180 (AA105_03185) | - | 605249..605881 (-) | 633 | WP_004194123.1 | YigZ family protein | - |
| AA105_RS03185 (AA105_03190) | comFA/cflA | 605938..607230 (+) | 1293 | WP_004194121.1 | DEAD/DEAH box helicase | Machinery gene |
| AA105_RS03190 (AA105_03195) | comFC/cflB | 607223..607888 (+) | 666 | WP_004194119.1 | ComF family protein | Machinery gene |
| AA105_RS03195 (AA105_03200) | raiA | 607965..608507 (+) | 543 | WP_004194117.1 | ribosome-associated translation inhibitor RaiA | - |
Sequence
Protein
Download Length: 221 a.a. Molecular weight: 25748.55 Da Isoelectric Point: 8.2726
>NTDB_id=145880 AA105_RS03190 WP_004194119.1 607223..607888(+) (comFC/cflB) [Streptococcus suis strain NSUI002]
MSNCLLCGQAMKNKTRFSDLIFFSKEKSGICEECFSTFEEIAEQHCPHCYKNGESESCKDCQYWQNQGKPVVHTALYQYN
QAMAHYFSRYKFQGDYVLRNIFAKKLRIALSQFPDYTIVPIPISQKRLSERGFNQVEGLLDATNIPYQSLLGKYESQKQS
SKNRAERLEAKQMFYLLDEKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFSLTR
MSNCLLCGQAMKNKTRFSDLIFFSKEKSGICEECFSTFEEIAEQHCPHCYKNGESESCKDCQYWQNQGKPVVHTALYQYN
QAMAHYFSRYKFQGDYVLRNIFAKKLRIALSQFPDYTIVPIPISQKRLSERGFNQVEGLLDATNIPYQSLLGKYESQKQS
SKNRAERLEAKQMFYLLDEKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFSLTR
Nucleotide
Download Length: 666 bp
>NTDB_id=145880 AA105_RS03190 WP_004194119.1 607223..607888(+) (comFC/cflB) [Streptococcus suis strain NSUI002]
ATGTCTAATTGTCTATTGTGCGGTCAAGCTATGAAAAATAAAACAAGATTTTCAGATCTCATCTTCTTTAGTAAAGAAAA
ATCGGGCATCTGTGAAGAATGTTTTTCGACTTTTGAGGAAATAGCAGAGCAACACTGTCCACATTGTTATAAAAATGGAG
AATCGGAAAGTTGCAAGGATTGTCAGTACTGGCAGAATCAAGGGAAACCAGTTGTCCACACAGCTTTGTACCAATATAAT
CAAGCGATGGCACATTATTTTAGTCGCTACAAATTTCAAGGAGACTATGTTTTAAGAAATATTTTTGCTAAAAAGCTTAG
AATAGCGTTAAGCCAATTTCCTGACTACACAATTGTTCCCATACCAATTAGTCAAAAACGACTATCAGAACGCGGTTTTA
ATCAAGTGGAAGGACTTTTGGATGCTACAAATATTCCTTATCAGTCCCTTCTTGGAAAGTATGAAAGCCAAAAACAATCA
TCTAAAAATCGTGCAGAGAGACTAGAAGCAAAACAGATGTTCTATCTATTAGATGAAAAAGAAGTGCCAGAAAAAATATT
ATTATTCGACGATATATATACAACAGGAGCCACAATCCAACTTGCTGTAGAACTTTTCATGAAAATTGGTAGGAAAGAAA
TCAAAACATTTTCACTAACACGATAA
ATGTCTAATTGTCTATTGTGCGGTCAAGCTATGAAAAATAAAACAAGATTTTCAGATCTCATCTTCTTTAGTAAAGAAAA
ATCGGGCATCTGTGAAGAATGTTTTTCGACTTTTGAGGAAATAGCAGAGCAACACTGTCCACATTGTTATAAAAATGGAG
AATCGGAAAGTTGCAAGGATTGTCAGTACTGGCAGAATCAAGGGAAACCAGTTGTCCACACAGCTTTGTACCAATATAAT
CAAGCGATGGCACATTATTTTAGTCGCTACAAATTTCAAGGAGACTATGTTTTAAGAAATATTTTTGCTAAAAAGCTTAG
AATAGCGTTAAGCCAATTTCCTGACTACACAATTGTTCCCATACCAATTAGTCAAAAACGACTATCAGAACGCGGTTTTA
ATCAAGTGGAAGGACTTTTGGATGCTACAAATATTCCTTATCAGTCCCTTCTTGGAAAGTATGAAAGCCAAAAACAATCA
TCTAAAAATCGTGCAGAGAGACTAGAAGCAAAACAGATGTTCTATCTATTAGATGAAAAAGAAGTGCCAGAAAAAATATT
ATTATTCGACGATATATATACAACAGGAGCCACAATCCAACTTGCTGTAGAACTTTTCATGAAAATTGGTAGGAAAGAAA
TCAAAACATTTTCACTAACACGATAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC/cflB | Streptococcus mitis SK321 |
49.083 |
98.643 |
0.484 |
| comFC/cflB | Streptococcus pneumoniae TIGR4 |
49.083 |
98.643 |
0.484 |
| comFC/cflB | Streptococcus pneumoniae Rx1 |
49.083 |
98.643 |
0.484 |
| comFC/cflB | Streptococcus pneumoniae D39 |
49.083 |
98.643 |
0.484 |
| comFC/cflB | Streptococcus pneumoniae R6 |
49.083 |
98.643 |
0.484 |
| comFC/cflB | Streptococcus mitis NCTC 12261 |
49.083 |
98.643 |
0.484 |