Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AA102_RS19705 Genome accession   NZ_CP011416
Coordinates   3948091..3948720 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain CFSAN029787     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3943091..3953720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA102_RS19680 (AA102_19665) ycbZ 3943492..3945252 (-) 1761 WP_000156526.1 Lon protease family protein -
  AA102_RS19685 (AA102_19670) matP 3945438..3945890 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AA102_RS19690 (AA102_19675) ompA 3945966..3947006 (-) 1041 WP_000750416.1 porin OmpA -
  AA102_RS19700 (AA102_19685) sulA 3947363..3947872 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AA102_RS19705 (AA102_19690) sxy/tfoX 3948091..3948720 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AA102_RS19710 (AA102_19695) yccS 3948683..3950845 (-) 2163 WP_146416709.1 YccS family putative transporter -
  AA102_RS19715 (AA102_19700) yccF 3950855..3951301 (-) 447 WP_001261235.1 YccF domain-containing protein -
  AA102_RS19720 (AA102_19705) helD 3951424..3953478 (+) 2055 WP_046881143.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=145853 AA102_RS19705 WP_000839153.1 3948091..3948720(+) (sxy/tfoX) [Escherichia coli strain CFSAN029787]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=145853 AA102_RS19705 WP_000839153.1 3948091..3948720(+) (sxy/tfoX) [Escherichia coli strain CFSAN029787]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment