Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   SpyM6D471_RS02235 Genome accession   NZ_CP011415
Coordinates   424353..425162 (+) Length   269 a.a.
NCBI ID   WP_011184291.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain D471     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 419353..430162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SpyM6D471_RS02215 (SpyM6D471_02210) - 419795..421042 (+) 1248 WP_011184289.1 AMP-binding protein -
  SpyM6D471_RS02220 (SpyM6D471_02215) - 421098..422132 (+) 1035 WP_011184290.1 DUF3114 domain-containing protein -
  SpyM6D471_RS02225 (SpyM6D471_02220) vicR 422294..423004 (+) 711 WP_002985645.1 response regulator YycF Regulator
  SpyM6D471_RS02230 (SpyM6D471_02225) vicK 422997..424349 (+) 1353 WP_002990673.1 cell wall metabolism sensor histidine kinase VicK Regulator
  SpyM6D471_RS02235 (SpyM6D471_02230) vicX 424353..425162 (+) 810 WP_011184291.1 MBL fold metallo-hydrolase Regulator
  SpyM6D471_RS02240 (SpyM6D471_02235) rnc 425594..426286 (+) 693 WP_002985639.1 ribonuclease III -
  SpyM6D471_RS02245 (SpyM6D471_02240) smc 426287..429826 (+) 3540 WP_011184292.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30081.18 Da        Isoelectric Point: 5.5314

>NTDB_id=145801 SpyM6D471_RS02235 WP_011184291.1 424353..425162(+) (vicX) [Streptococcus pyogenes strain D471]
MNESGFKYSILASGSTGNCFYLETPKKRLLIDAGLTGKKITSLLAEIDRKPEDLDAILITHEHSDHIKGVGVMARKYHLD
IYANEKTWQLMDECNMLGKLDASQKHIFQRDKVLTFGDVDIESFGVSHDAVDPQFYRIMKDNKSFVMLTDTGYVSDRMTG
IIENADGYLIESNHDIEILRSGSYPWSLKQRILSDLGHLSNEDGAGAMIRSLGYNTKKIYLGHLSKENNIKELAHMTMVN
QLAMADLAVGTDFTVHDTSPDTACPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=145801 SpyM6D471_RS02235 WP_011184291.1 424353..425162(+) (vicX) [Streptococcus pyogenes strain D471]
ATGAATGAGAGTGGTTTTAAATATAGTATTTTAGCATCTGGGTCCACAGGAAATTGTTTTTATTTAGAAACACCTAAAAA
ACGCTTATTGATTGATGCAGGGCTTACTGGTAAGAAAATTACCAGTCTTCTTGCTGAAATTGACCGCAAACCTGAGGATT
TGGATGCTATTTTGATTACCCATGAGCACTCTGACCATATTAAGGGTGTAGGCGTTATGGCCCGCAAATACCATTTGGAT
ATCTATGCTAATGAAAAAACATGGCAGCTGATGGATGAGTGCAATATGCTAGGTAAGCTTGATGCCTCACAAAAACATAT
TTTCCAAAGGGATAAAGTTTTGACCTTTGGAGATGTTGACATTGAAAGTTTTGGCGTTAGTCACGATGCAGTTGATCCTC
AGTTTTACCGCATTATGAAGGACAACAAATCGTTTGTGATGCTGACTGATACAGGTTATGTCAGTGACCGAATGACAGGT
ATTATTGAAAATGCGGATGGCTACTTGATTGAATCCAATCATGATATTGAAATTTTGAGATCAGGCTCTTATCCTTGGAG
CTTGAAGCAGCGTATTTTATCTGATTTAGGACATTTATCAAATGAAGATGGAGCGGGAGCCATGATTAGAAGCCTGGGGT
ACAATACCAAAAAAATATACCTAGGTCATCTGAGTAAAGAAAATAACATCAAAGAGTTAGCGCATATGACGATGGTCAAT
CAACTGGCTATGGCAGATTTAGCAGTAGGTACAGACTTTACGGTCCATGATACCTCTCCAGATACTGCTTGTCCATTAAC
TGATATTTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

75.836

100

0.758

Multiple sequence alignment