Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   F506_RS01590 Genome accession   NZ_CP011409
Coordinates   347216..348697 (-) Length   493 a.a.
NCBI ID   WP_053195043.1    Uniprot ID   -
Organism   Herbaspirillum hiltneri N3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 342216..353697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F506_RS01555 (F506_01555) - 342418..343266 (+) 849 WP_083457516.1 ABC transporter ATP-binding protein -
  F506_RS01560 (F506_01560) - 343266..344102 (+) 837 WP_053195037.1 ABC transporter permease -
  F506_RS01565 (F506_01565) arsC 344137..344490 (-) 354 Protein_314 arsenate reductase (glutaredoxin) -
  F506_RS01570 (F506_01570) - 344678..345436 (+) 759 WP_053195039.1 SDR family oxidoreductase -
  F506_RS01575 (F506_01575) - 345484..346020 (-) 537 WP_407638203.1 UbiX family flavin prenyltransferase -
  F506_RS01580 (F506_01580) grxD 346094..346405 (-) 312 WP_053195041.1 Grx4 family monothiol glutaredoxin -
  F506_RS01585 (F506_01585) hpf 346739..347092 (-) 354 WP_053195042.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  F506_RS01590 (F506_01590) rpoN/rpoN1 347216..348697 (-) 1482 WP_053195043.1 RNA polymerase factor sigma-54 Machinery gene
  F506_RS01595 (F506_01595) lptB 348721..349464 (-) 744 WP_053195044.1 LPS export ABC transporter ATP-binding protein -
  F506_RS01600 (F506_01600) lptA 349466..350023 (-) 558 WP_053195045.1 lipopolysaccharide transport periplasmic protein LptA -
  F506_RS01605 (F506_01605) lptC 350080..350691 (-) 612 WP_053195046.1 LPS export ABC transporter periplasmic protein LptC -
  F506_RS01610 (F506_01610) - 350688..351239 (-) 552 WP_053195047.1 HAD family hydrolase -
  F506_RS01615 (F506_01615) - 351239..352267 (-) 1029 WP_053195048.1 SIS domain-containing protein -

Sequence

Protein


Download         Length: 493 a.a.        Molecular weight: 54731.20 Da        Isoelectric Point: 5.2746

>NTDB_id=145673 F506_RS01590 WP_053195043.1 347216..348697(-) (rpoN/rpoN1) [Herbaspirillum hiltneri N3]
MKQSLQLRTSQHLALTPQLQQSIRLLQLSTLELHQELEQILSDNPLLERLDDALDNSVRLLADGAISSPPSAQADPVENT
AASAAPAEGEAGDPQDSVVGDDHAGGDTDWSFDDVARTGKTPDDEDSRPQLEAHDITLREHLQEQTRLTVRSLRDRALIE
LIVDAIDDHGYLEESLEEIHARLPEELEIELDELTIALKLLQSFDPAGIGARSASECLALQIRRLPKVAFVTRRLALTIV
EDYLALFAQRDFNKIKKALGCDDEDLREAQAVIRQCHPHPGAVFASGRSDYVVPDVIVKAAKDGWQVLLNHDVMPRLRVN
AMYANALKQTKGDGSLGSQLQEAKWLIKNMRQRFDTILRVAQAIVERQRNFFSHGAVAMRPLVLREIADTLGLHESTISR
VTTQKYMLTPHGMFELKYFFGSHVATETGGEASSTAIRALIKQLIGAEDPKNPLSDSKIADMLAEQGMVVARRTVAKYRE
VLKIPPVNLRKSL

Nucleotide


Download         Length: 1482 bp        

>NTDB_id=145673 F506_RS01590 WP_053195043.1 347216..348697(-) (rpoN/rpoN1) [Herbaspirillum hiltneri N3]
ATGAAACAATCCCTCCAGCTTCGCACCTCCCAGCATCTGGCATTGACGCCGCAGTTGCAGCAGTCGATCCGTTTGCTGCA
GCTGTCGACGCTGGAGCTGCACCAGGAACTGGAACAGATCCTGTCGGACAATCCGCTGCTGGAACGCCTCGATGACGCGC
TCGACAATTCCGTGCGGCTGCTGGCCGACGGCGCCATCAGCAGCCCGCCTTCGGCGCAGGCCGATCCGGTCGAGAACACC
GCGGCCAGCGCCGCCCCGGCTGAAGGCGAAGCCGGCGATCCGCAGGACAGCGTAGTCGGCGACGACCACGCCGGCGGCGA
CACCGACTGGAGCTTCGACGACGTCGCCCGCACCGGCAAGACGCCCGACGACGAAGATTCGCGTCCGCAACTCGAAGCGC
ATGACATCACGCTGCGCGAACATCTGCAGGAGCAGACGCGCCTGACGGTGCGCAGCCTGCGCGACCGCGCGCTGATCGAA
CTGATCGTCGATGCGATCGATGACCATGGCTATCTGGAAGAGTCGCTCGAAGAAATCCACGCGCGCTTGCCCGAAGAACT
GGAAATCGAACTTGACGAACTGACCATTGCGCTGAAGCTGCTGCAGAGCTTCGACCCGGCCGGCATCGGCGCACGCAGCG
CGTCCGAATGCCTGGCGCTGCAGATCCGGCGCTTGCCGAAAGTTGCCTTTGTCACACGCCGGTTGGCGCTGACGATCGTC
GAAGATTATCTGGCGCTGTTCGCCCAGCGCGATTTCAACAAGATCAAGAAAGCGCTCGGCTGCGACGATGAAGACCTGCG
CGAAGCGCAAGCCGTGATTCGCCAGTGCCATCCGCATCCCGGCGCCGTATTTGCATCGGGCCGATCCGACTACGTGGTGC
CCGATGTCATTGTCAAGGCGGCCAAGGACGGCTGGCAGGTTTTGCTCAACCACGACGTGATGCCGCGACTGCGCGTCAAC
GCCATGTATGCCAATGCGCTCAAGCAAACCAAGGGCGACGGATCGCTCGGTTCGCAGCTGCAGGAAGCCAAGTGGCTGAT
CAAGAATATGCGGCAACGCTTCGACACAATTTTGCGTGTCGCCCAGGCAATTGTTGAGAGGCAACGCAACTTTTTTTCGC
ATGGCGCAGTTGCCATGCGCCCCCTTGTGTTGCGCGAAATAGCTGATACACTAGGTCTACACGAGAGCACTATTTCTCGT
GTAACGACTCAGAAATACATGCTGACTCCGCATGGCATGTTTGAGTTGAAATACTTCTTCGGCAGCCACGTCGCAACGGA
AACAGGAGGTGAAGCTTCCTCCACTGCGATACGGGCTCTCATCAAACAACTGATAGGAGCAGAAGACCCTAAGAACCCAC
TCTCTGATAGCAAGATTGCAGATATGTTGGCGGAACAGGGCATGGTGGTGGCGCGACGGACTGTCGCGAAATACCGCGAA
GTGCTCAAAATCCCGCCGGTAAATCTCCGCAAATCTCTGTAA

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(338-491)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(132-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

60.277

100

0.619

Multiple sequence alignment