Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   AYM13_RS09345 Genome accession   NZ_CP014362
Coordinates   1829395..1830669 (+) Length   424 a.a.
NCBI ID   WP_076035553.1    Uniprot ID   -
Organism   Staphylococcus aureus strain USA300-SUR1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1824395..1835669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYM13_RS09325 (AYM13_09110) - 1825719..1825814 (+) 96 WP_001789986.1 hypothetical protein -
  AYM13_RS09330 (AYM13_09115) - 1825775..1826905 (-) 1131 WP_000721707.1 HAD family hydrolase -
  AYM13_RS09335 (AYM13_09120) nagE 1827012..1828478 (-) 1467 WP_000276371.1 N-acetylglucosamine-specific PTS transporter subunit IIBC -
  AYM13_RS09340 (AYM13_09125) - 1828606..1829223 (-) 618 WP_000287588.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  AYM13_RS09345 (AYM13_09130) htrA 1829395..1830669 (+) 1275 WP_076035553.1 trypsin-like peptidase domain-containing protein Regulator
  AYM13_RS09350 (AYM13_09135) tyrS 1830763..1832025 (-) 1263 WP_000186029.1 tyrosine--tRNA ligase -
  AYM13_RS09355 (AYM13_09140) - 1832408..1833313 (+) 906 WP_000184370.1 transglycosylase domain-containing protein -
  AYM13_RS09360 (AYM13_09145) - 1833293..1833385 (-) 93 WP_001789987.1 hypothetical protein -

Sequence


Protein


Download         Length: 424 a.a.        Molecular weight: 45833.01 Da        Isoelectric Point: 9.9696

>NTDB_id=145661 AYM13_RS09345 WP_076035553.1 1829395..1830669(+) (htrA) [Staphylococcus aureus strain USA300-SUR1]
MSDFNHTDHSTTNHSQTPRYRRPKFPWFKTVIVALIAGIIGALLVLSIGKVLNSTILNKDGSTVQTTNNKGGNQLDGQSK
KFGTVHEMIKSVSPTIVGVINMQKASSVDDLLKGKSSKPSEAGVGSGVIYQINNNSAYIVTNNHVIDGANEIRVQLHNKK
QVKAKLVGKDAVTDIAVLKIENTKGIKAIQFANSSKVQTGDSVFAMGNPLGLQFANSVTSGIISASERTIDAETTGGNTK
VSVLQTDAAINPGNSGGALVDINGNLVGINSMKIAATQVEGIGFAIPSNEVKVTIEQLVKHGKIDRPSIGIGLINLKDIP
EEEREQLHTDREDGIYVAKADSDIDLKKGDIITEIDGKKIKDDVDLRSYLYENKKPGESVTVTVIRDGKTKEVKVKLKQQ
KEQPKRQSRSERQSPGQGDRDFFR

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=145661 AYM13_RS09345 WP_076035553.1 1829395..1830669(+) (htrA) [Staphylococcus aureus strain USA300-SUR1]
ATGTCAGATTTTAATCATACAGATCATTCTACAACAAACCATAGCCAAACACCTAGATACAGAAGACCTAAATTTCCATG
GTTTAAAACAGTCATCGTTGCATTGATTGCTGGAATTATTGGTGCACTTCTAGTACTTAGTATAGGCAAAGTATTAAATA
GTACAATTTTAAATAAAGATGGTTCAACTGTTCAGACAACAAATAATAAAGGTGGCAATCAATTAGACGGTCAAAGCAAG
AAATTCGGTACCGTTCATGAAATGATAAAATCTGTCTCCCCTACAATTGTTGGAGTTATTAACATGCAAAAAGCATCAAG
TGTAGACGACTTATTAAAAGGCAAATCATCTAAACCATCTGAAGCTGGAGTAGGTTCAGGTGTTATCTATCAAATAAACA
ACAATTCAGCTTATATCGTTACAAACAATCATGTTATTGATGGCGCAAATGAAATTAGAGTCCAATTACATAATAAAAAA
CAAGTTAAAGCGAAATTAGTTGGTAAAGATGCAGTAACTGATATTGCTGTACTTAAAATTGAAAATACAAAAGGTATTAA
AGCGATTCAATTTGCCAACTCTTCAAAAGTACAAACTGGCGATAGCGTATTCGCAATGGGTAACCCATTAGGATTACAAT
TTGCTAACTCTGTAACATCTGGTATCATTTCAGCAAGCGAACGTACGATTGACGCTGAGACAACTGGTGGCAATACAAAA
GTTAGCGTTCTTCAAACAGATGCTGCTATTAACCCAGGTAACTCAGGTGGCGCATTAGTAGATATTAATGGTAATTTAGT
TGGTATTAACTCAATGAAAATTGCTGCGACACAAGTTGAAGGTATCGGGTTTGCTATTCCAAGTAATGAAGTTAAAGTAA
CAATTGAACAACTTGTAAAACATGGTAAAATTGACCGCCCTTCGATTGGTATTGGTTTAATTAATTTGAAAGATATTCCT
GAAGAAGAGCGCGAGCAACTTCATACTGATAGAGAAGACGGTATTTATGTCGCCAAAGCTGATAGTGATATTGATCTTAA
AAAAGGTGATATTATTACAGAAATTGATGGCAAGAAAATTAAAGATGATGTTGATTTAAGAAGCTATTTATATGAAAATA
AAAAACCTGGTGAATCAGTCACTGTTACCGTTATCCGTGATGGTAAAACAAAAGAAGTTAAAGTGAAATTAAAACAACAA
AAAGAACAACCAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

38.806

94.811

0.368


Multiple sequence alignment