Detailed information NTG0145648

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FORC14_RS13600
• Genome accession: NZ_CP011406
• Coordinates: 2928988..2929977 (-)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain FORC_014
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2923988..2934977

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FORC14_RS13585 (FORC14_2670)	recA	2924537..2925580 (-)	1044	WP_005478550.1	recombinase RecA	Machinery gene
FORC14_RS13590 (FORC14_2671)	pncC	2925781..2926263 (-)	483	WP_063517761.1	nicotinamide-nucleotide amidase	-
FORC14_RS13595 (FORC14_2672)	mutS	2926348..2928909 (+)	2562	WP_063517762.1	DNA mismatch repair protein MutS	-
FORC14_RS13600 (FORC14_2673)	rpoS	2928988..2929977 (-)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
FORC14_RS13605 (FORC14_2674)	-	2930058..2930981 (-)	924	WP_024699751.1	peptidoglycan DD-metalloendopeptidase family protein	-
FORC14_RS13610 (FORC14_2675)	-	2930996..2931622 (-)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
FORC14_RS13615 (FORC14_2676)	surE	2931622..2932398 (-)	777	WP_063517763.1	5'/3'-nucleotidase SurE	-
FORC14_RS13620 (FORC14_2677)	truD	2932398..2933441 (-)	1044	WP_005455570.1	tRNA pseudouridine(13) synthase TruD	-
FORC14_RS13625 (FORC14_2678)	ispF	2933488..2933964 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FORC14_RS13630 (FORC14_2679)	ispD	2933982..2934686 (-)	705	WP_005478544.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FORC14_RS13635 (FORC14_2680)	ftsB	2934688..2934969 (-)	282	WP_005455577.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=145648 FORC14_RS13600 WP_005478537.1 2928988..2929977(-) (rpoS) [Vibrio parahaemolyticus strain FORC_014]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=145648 FORC14_RS13600 WP_005478537.1 2928988..2929977(-) (rpoS) [Vibrio parahaemolyticus strain FORC_014]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851