Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   lsr_RS06185 Genome accession   NZ_CP011403
Coordinates   1230970..1232343 (-) Length   457 a.a.
NCBI ID   WP_047035811.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius str. Ren     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1225970..1237343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  lsr_RS06165 (LsR_01180) - 1226250..1226657 (-) 408 WP_003700685.1 Mini-ribonuclease 3 -
  lsr_RS06170 (LsR_01181) cysS 1226650..1228062 (-) 1413 WP_003702615.1 cysteine--tRNA ligase -
  lsr_RS06175 (LsR_01182) gltX 1228214..1229701 (-) 1488 WP_003700687.1 glutamate--tRNA ligase -
  lsr_RS06180 (LsR_01183) - 1229832..1230944 (-) 1113 WP_003700688.1 PIN/TRAM domain-containing protein -
  lsr_RS06185 (LsR_01184) radA 1230970..1232343 (-) 1374 WP_047035811.1 DNA repair protein RadA Machinery gene
  lsr_RS06190 (LsR_01185) - 1232361..1232897 (-) 537 WP_047035813.1 hypothetical protein -
  lsr_RS06195 (LsR_01186) - 1233053..1233331 (+) 279 WP_003702618.1 GNAT family N-acetyltransferase -
  lsr_RS06200 (LsR_01187) - 1233420..1234754 (+) 1335 WP_003700692.1 aminopeptidase C -
  lsr_RS06205 (LsR_01188) - 1234964..1235317 (+) 354 WP_034983230.1 bacteriocin immunity protein -
  lsr_RS06210 (LsR_01189) - 1235487..1236161 (-) 675 WP_003706506.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase -
  lsr_RS06215 (LsR_01190) - 1236183..1237127 (-) 945 WP_047035814.1 AEC family transporter -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49756.39 Da        Isoelectric Point: 8.0254

>NTDB_id=145619 lsr_RS06185 WP_047035811.1 1230970..1232343(-) (radA) [Ligilactobacillus salivarius str. Ren]
MAKTKTRYVCQNCEYISPRYLGRCPNCGSWNSLVEEIEKKESSTKAQPRVSISGTTVKPKLIDDVSTVETPRFKTNLEEL
NRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSGQLSTLGKKVLYVSGEESATQIKLRADRLGVHGTELYLYPETDMDSIR
KNIELLKPDFVVIDSVQTMQEPEMTAAVGSVSQIREVTGDLMQIAKTNGITVFVVGHVTKGGAIAGPKILEHMVDTVLYF
EGDQHRTFRILRAVKNRFGSTNEIGIFEMKNGGLSEVANPSEIFLEERLKGATGSAVVASLEGTRPILVEFQALVTPTAF
GNAKRTTTGLDHNRVALLMAVLEKRAGLLLQNQDAYLKAAGGVKLDEPAIDLAIAVSLVSSYRDAETRPTDCFIGEVGLT
GEIRRVNRIEQRVVEAAKLGFKRVFLPKNNLDGWMPPKEIEVVGVSTLNQALKLIFS

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=145619 lsr_RS06185 WP_047035811.1 1230970..1232343(-) (radA) [Ligilactobacillus salivarius str. Ren]
TTGGCGAAAACTAAGACAAGATATGTTTGTCAAAATTGTGAATATATCTCTCCACGTTATTTAGGACGTTGCCCTAATTG
TGGTTCTTGGAATAGCTTGGTAGAGGAAATAGAGAAAAAGGAAAGTTCAACTAAAGCACAACCTAGAGTTAGTATCTCTG
GTACAACAGTGAAACCTAAATTAATTGATGATGTTTCTACTGTAGAAACTCCAAGATTTAAAACTAATTTAGAAGAATTG
AATCGTGTTTTAGGTGGCGGAATTGTTCCCGGATCTTTAGTGTTAATTGGTGGAGATCCAGGTATTGGCAAGTCTACATT
ATTATTACAAGTTTCTGGACAATTATCTACTCTCGGGAAAAAGGTTCTTTATGTTTCTGGGGAAGAAAGTGCAACTCAAA
TTAAATTACGTGCGGATCGTTTAGGAGTTCATGGAACTGAGCTATATTTATATCCTGAAACAGATATGGATAGTATTAGA
AAAAATATTGAACTTTTAAAGCCTGATTTTGTTGTAATCGATTCGGTGCAGACAATGCAGGAGCCAGAAATGACAGCCGC
AGTTGGAAGTGTTTCTCAAATTAGGGAAGTAACTGGAGATTTGATGCAAATTGCGAAAACTAATGGGATAACTGTCTTTG
TTGTAGGACATGTTACTAAAGGTGGAGCAATTGCAGGGCCTAAAATTTTAGAACACATGGTAGATACTGTTCTTTATTTT
GAGGGAGATCAACATAGAACATTTAGAATTTTACGAGCTGTTAAAAATAGATTTGGTTCAACTAATGAAATTGGAATCTT
TGAAATGAAAAATGGAGGATTAAGCGAAGTTGCTAATCCATCAGAGATTTTTCTAGAAGAAAGATTAAAAGGGGCTACGG
GATCAGCTGTCGTTGCTTCTCTTGAAGGAACTAGACCCATATTGGTAGAATTCCAAGCACTAGTAACACCGACTGCATTT
GGAAATGCTAAGCGAACAACAACTGGTTTAGATCACAATCGAGTTGCGTTACTGATGGCAGTACTTGAAAAAAGAGCTGG
TTTGTTATTGCAAAATCAGGATGCTTATTTGAAGGCTGCTGGTGGAGTGAAGTTAGATGAGCCAGCAATAGATTTAGCCA
TTGCTGTTAGTTTAGTTTCTAGTTATCGCGATGCAGAAACAAGACCAACTGACTGTTTTATAGGGGAAGTGGGATTAACT
GGTGAAATAAGACGAGTTAATCGTATTGAACAGCGTGTTGTTGAGGCTGCTAAGCTAGGATTTAAGCGAGTATTTTTACC
AAAGAACAACTTAGATGGTTGGATGCCTCCAAAAGAGATTGAAGTAGTAGGCGTAAGTACACTAAATCAAGCATTAAAAC
TAATTTTTAGTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(364-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(67-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

68.49

100

0.685
  radA Streptococcus mitis SK321

68.271

100

0.683
  radA Streptococcus pneumoniae Rx1

68.271

100

0.683
  radA Streptococcus pneumoniae D39

68.271

100

0.683
  radA Streptococcus pneumoniae R6

68.271

100

0.683
  radA Streptococcus pneumoniae TIGR4

68.271

100

0.683
  radA Bacillus subtilis subsp. subtilis str. 168

65.563

99.125

0.65

Multiple sequence alignment