Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   lsr_RS02980 Genome accession   NZ_CP011403
Coordinates   575187..576854 (+) Length   555 a.a.
NCBI ID   WP_047035444.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius str. Ren     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 570187..581854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  lsr_RS02950 (LsR_00543) folD 570569..571426 (+) 858 WP_047035440.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  lsr_RS02955 (LsR_00544) xseA 571419..572759 (+) 1341 WP_047035442.1 exodeoxyribonuclease VII large subunit -
  lsr_RS02960 (LsR_00545) - 572759..572986 (+) 228 WP_003699848.1 exodeoxyribonuclease VII small subunit -
  lsr_RS02965 (LsR_00546) - 572952..573869 (+) 918 WP_003699850.1 polyprenyl synthetase family protein -
  lsr_RS02970 (LsR_00547) - 573872..574699 (+) 828 WP_003704070.1 TlyA family rRNA (cytidine-2'-O)-methyltransferase -
  lsr_RS02975 (LsR_00548) - 574724..575182 (+) 459 WP_003699854.1 arginine repressor -
  lsr_RS02980 (LsR_00549) recN 575187..576854 (+) 1668 WP_047035444.1 DNA repair protein RecN Machinery gene
  lsr_RS02985 (LsR_00550) lexA 576918..577538 (-) 621 WP_003699857.1 transcriptional repressor LexA -
  lsr_RS02990 (LsR_00551) - 577649..577939 (+) 291 WP_047035445.1 DUF896 domain-containing protein -
  lsr_RS02995 (LsR_00552) - 578066..578290 (+) 225 WP_003705934.1 YneF family protein -
  lsr_RS03000 (LsR_00553) yihA 578373..578963 (+) 591 WP_003709878.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  lsr_RS03005 (LsR_00554) - 578981..579280 (+) 300 WP_003699862.1 nucleoside triphosphate pyrophosphohydrolase family protein -
  lsr_RS03010 (LsR_00555) - 579384..581198 (+) 1815 WP_225355745.1 DUF2207 domain-containing protein -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 63263.99 Da        Isoelectric Point: 4.8145

>NTDB_id=145608 lsr_RS02980 WP_047035444.1 575187..576854(+) (recN) [Ligilactobacillus salivarius str. Ren]
MLQELSIKDFAIIDEIQISFQPKMTVLTGETGAGKSIIIDALGLLAGGRGSTEFIRKGEKKAVIQGLFTLPREANTYNIL
EEYGIDSEDGQIILQRDLYRGGRNICRINGMMVNLATLRKVGETLIDIHGQNEHQELMKPENHIDLLDEYDKKTSQLRNQ
YQVVYQNYRKLKLSMEKKEADEKAWAQRLDMLNFQVKEIEEAGLKINEEDELVEEKNKLDNFQAIYDALELSYQILSGEK
IDVVGNLGNAMNELSDVSDLSENLQEINTKISDAFYSLEDAARDISDELDSMEWNGERLNEIEERLELIHQLKRKYGDTI
EDILHYHSRIEKELREMENAEQNSEKQERQLSEALEKVKELAIKLSKQRKKSAKKLEKMIHEQLSALYMDKAVFEVKFLN
NSKLYSKGIDKVEFYIQTNPGEEMGPLAKIASGGELSRIMLALKTIFSQKMGVTSIIFDEVDTGVSGRVAQAIAEKISQI
SNNSQVLCITHLPQVAAIADNHYYISKSVNDGRTETSLKELDEKQKIREIARMLSGSEITELTLKHAEELIKMSK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=145608 lsr_RS02980 WP_047035444.1 575187..576854(+) (recN) [Ligilactobacillus salivarius str. Ren]
ATGTTACAAGAATTATCAATAAAGGATTTCGCCATTATAGATGAAATACAAATATCATTTCAACCTAAGATGACAGTATT
GACGGGTGAGACAGGTGCTGGTAAATCAATTATTATTGATGCTCTGGGCTTATTAGCAGGAGGCAGAGGTTCTACTGAAT
TTATTCGTAAGGGTGAGAAAAAAGCTGTTATTCAGGGGTTATTTACATTACCTAGAGAAGCTAATACTTACAACATTTTG
GAAGAATACGGAATAGATTCTGAAGATGGACAAATAATCTTGCAAAGAGATTTATATCGAGGCGGAAGAAATATTTGTCG
CATCAATGGAATGATGGTAAATTTGGCAACTTTACGAAAGGTAGGAGAAACATTAATTGATATTCATGGGCAGAATGAGC
ACCAAGAATTGATGAAGCCAGAAAACCATATAGATTTGTTAGATGAATATGATAAAAAAACATCCCAGTTAAGAAATCAA
TATCAAGTTGTGTATCAAAATTATCGTAAGCTAAAATTATCAATGGAAAAAAAAGAAGCTGATGAGAAGGCCTGGGCCCA
AAGACTAGATATGCTAAATTTCCAAGTCAAAGAAATTGAAGAAGCTGGTTTAAAAATTAATGAAGAAGATGAACTAGTCG
AAGAAAAAAATAAATTGGATAATTTTCAAGCAATATATGATGCTTTAGAATTGAGTTATCAAATTTTATCTGGTGAAAAA
ATAGATGTAGTTGGAAATTTAGGAAATGCAATGAATGAGTTAAGCGATGTTTCAGATTTATCAGAAAATCTTCAAGAAAT
CAATACTAAAATTTCAGATGCTTTTTATAGTCTAGAAGATGCCGCTCGTGATATTTCAGATGAACTTGATTCAATGGAGT
GGAATGGAGAAAGGTTAAATGAAATAGAGGAAAGATTAGAGTTGATCCACCAATTGAAGAGAAAATATGGTGATACAATA
GAGGATATTTTGCATTATCATAGTAGAATTGAAAAAGAATTAAGAGAAATGGAAAATGCGGAACAAAATTCAGAAAAGCA
AGAAAGACAATTATCTGAGGCATTAGAAAAAGTAAAAGAATTGGCAATAAAACTTTCGAAACAGCGGAAGAAAAGCGCTA
AAAAATTAGAAAAAATGATCCATGAACAATTAAGTGCATTATATATGGACAAAGCTGTATTTGAAGTTAAATTTTTAAAT
AATTCTAAATTATATTCTAAAGGTATCGATAAAGTTGAATTTTATATTCAAACTAATCCAGGTGAAGAAATGGGCCCATT
AGCTAAGATAGCTTCAGGTGGTGAACTTTCACGAATAATGTTAGCTTTAAAAACAATTTTTTCTCAAAAGATGGGTGTCA
CAAGTATTATCTTTGATGAAGTTGATACTGGTGTTAGCGGTCGTGTAGCTCAAGCGATTGCTGAAAAAATAAGCCAAATT
TCAAATAATTCACAAGTTTTATGCATTACTCACTTACCGCAAGTTGCAGCAATTGCAGACAATCATTACTATATTTCAAA
ATCTGTCAACGATGGTAGAACAGAAACTTCATTAAAAGAATTAGATGAAAAACAAAAAATTAGAGAGATAGCAAGAATGT
TATCTGGATCTGAAATTACAGAATTAACATTGAAACATGCAGAAGAATTAATTAAAATGTCAAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.601

100

0.501

Multiple sequence alignment