Detailed information    

insolico Bioinformatically predicted

Overview


Name   rec2   Type   Machinery gene
Locus tag   ASU2_RS03190 Genome accession   NC_018690
Coordinates   675504..677798 (+) Length   764 a.a.
NCBI ID   WP_014991376.1    Uniprot ID   K0G559
Organism   Actinobacillus suis H91-0380     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 674153..701926 675504..677798 within 0


Gene organization within MGE regions


Location: 674153..701926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASU2_RS03185 (ASU2_03140) sstT 674153..675364 (+) 1212 WP_014991375.1 serine/threonine transporter SstT -
  ASU2_RS03190 (ASU2_03145) rec2 675504..677798 (+) 2295 WP_014991376.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ASU2_RS03195 (ASU2_03150) queA 677812..678897 (-) 1086 WP_014991377.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  ASU2_RS03200 (ASU2_03155) - 678943..679872 (-) 930 WP_014991378.1 gluconeogenesis factor YvcK family protein -
  ASU2_RS03205 (ASU2_03160) - 679967..681031 (-) 1065 WP_014991379.1 AI-2E family transporter -
  ASU2_RS03210 (ASU2_03165) - 681089..681844 (-) 756 WP_005622811.1 class I SAM-dependent methyltransferase -
  ASU2_RS11865 (ASU2_03170) - 682022..682258 (+) 237 Protein_632 alternative ribosome-rescue factor A -
  ASU2_RS03220 (ASU2_03175) gpU 682756..683154 (+) 399 WP_014991381.1 phage tail terminator protein -
  ASU2_RS03225 (ASU2_03180) - 683164..684351 (+) 1188 WP_014991382.1 phage major capsid protein -
  ASU2_RS03230 (ASU2_03185) - 684426..684998 (+) 573 WP_005607685.1 HK97 family phage prohead protease -
  ASU2_RS03235 (ASU2_03190) - 685000..686232 (+) 1233 WP_014991383.1 phage portal protein -
  ASU2_RS03240 (ASU2_03195) - 686216..686563 (+) 348 WP_014991384.1 phage head closure protein -
  ASU2_RS03245 (ASU2_03200) - 686553..686861 (+) 309 WP_014991385.1 head-tail connector protein -
  ASU2_RS03250 (ASU2_03205) - 686870..687226 (+) 357 WP_005620820.1 HNH endonuclease -
  ASU2_RS03255 (ASU2_03210) - 687400..687759 (+) 360 WP_005607679.1 phage terminase small subunit P27 family -
  ASU2_RS03260 (ASU2_03215) - 687756..689426 (+) 1671 WP_014991387.1 terminase large subunit -
  ASU2_RS03270 (ASU2_03225) - 689674..690141 (+) 468 WP_005617264.1 HK97-gp10 family putative phage morphogenesis protein -
  ASU2_RS03275 (ASU2_03230) - 690510..691478 (+) 969 WP_014991389.1 hypothetical protein -
  ASU2_RS03280 (ASU2_03235) - 691613..691816 (+) 204 WP_014991390.1 helix-turn-helix transcriptional regulator -
  ASU2_RS03285 (ASU2_03240) - 691828..692190 (+) 363 WP_014991391.1 hypothetical protein -
  ASU2_RS11870 (ASU2_03245) - 692195..692500 (+) 306 WP_012478430.1 hypothetical protein -
  ASU2_RS03290 (ASU2_03250) - 692589..693140 (+) 552 WP_014991392.1 ash family protein -
  ASU2_RS03295 (ASU2_03255) - 693133..693357 (+) 225 WP_014991393.1 hypothetical protein -
  ASU2_RS03300 (ASU2_03260) - 693367..693792 (+) 426 WP_014991394.1 hypothetical protein -
  ASU2_RS03305 (ASU2_03265) - 693779..695581 (+) 1803 WP_014991395.1 DNA primase family protein -
  ASU2_RS03310 (ASU2_03270) - 695752..696972 (-) 1221 WP_014991396.1 tyrosine-type recombinase/integrase -
  ASU2_RS03320 (ASU2_03275) apaH 697314..698126 (-) 813 WP_014991397.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH -
  ASU2_RS03325 (ASU2_03280) - 698155..698841 (-) 687 WP_014991398.1 LrgB family protein -
  ASU2_RS03330 (ASU2_03285) - 698838..699209 (-) 372 WP_014991399.1 CidA/LrgA family protein -
  ASU2_RS03335 (ASU2_03290) - 699284..701260 (-) 1977 WP_014991400.1 exoribonuclease II -
  ASU2_RS03340 (ASU2_03295) - 701395..701673 (-) 279 WP_009874879.1 BrnA antitoxin family protein -
  ASU2_RS03345 (ASU2_03300) - 701648..701926 (-) 279 WP_014991401.1 BrnT family toxin -

Sequence


Protein


Download         Length: 764 a.a.        Molecular weight: 87858.88 Da        Isoelectric Point: 9.9059

>NTDB_id=1456 ASU2_RS03190 WP_014991376.1 675504..677798(+) (rec2) [Actinobacillus suis H91-0380]
MNFDRFVLVLSLFFLPLLFLPQEWLTYGCYVAVLIIIIGIFRKQALTILLGALILVSYWQIINISESADKYAIPSQQLYQ
FQVQKIIKQDEFQTALARLENGDLIYLNWQSDEPLELEQHYQANLKIRPIAARLNIGNFDRQRWFFAHHLKGSATVKKAN
KLVSQYVRSLRVQWLEYVRKQLEPFPSRGLLLALAFGERAWLANSDWQLFQQTSTAHLIAISGLHIGLAMGIGFWLAKCI
QWLFLRIGVLSAGSISIFFPRCVGLVFAIFYSYLSGFAIPTLRALLAISLVLLCQWLRRYYTAWQLWWRIVALLLVLDPL
TILSDSFWLSVLAVLSLIIWYQYFPLTKLFPFCKKWQKFNRLWLSLVHLQLGIFLVFSPVQFFFFEGISPWAFITNFIIV
PLYSLLLVPLVIFSLLTNNILNSWAWADWLAQGSLKILSLLSADWITLSQSEQHYLFALNALCLLLLYLLQEKLFIRYWK
LLGLFVLSSSFAIFFIKFPVSPEWVTFDVGQGLAQALVYQDSGKKRAILYDTGASWKDKSGRIGSMAQLEILPYLKRNGI
QVEAVFLSHDDNDHSGGAEDILAEYPHARLISASTRRYAKHDPEACIAGQTWQFGQFELKAIYPISRVKRAKNEDSCIIL
VKIDRFSLLFTGDTTSAKEGSFAHKIGQVDFLQISHHGSKTSSSYTLLAQTKPQIAIISAGRWNPWKMPHQQVLTRLSQQ
NIKTFSTARVGMVKVSFEKGSWKIETARNNRSPWYRETYGLPNQ

Nucleotide


Download         Length: 2295 bp        

>NTDB_id=1456 ASU2_RS03190 WP_014991376.1 675504..677798(+) (rec2) [Actinobacillus suis H91-0380]
ATGAATTTTGACCGCTTTGTTCTTGTCCTTTCGTTATTTTTTCTTCCATTACTTTTCTTACCCCAAGAATGGCTTACTTA
TGGCTGCTATGTGGCAGTTTTGATAATTATTATAGGAATATTCCGTAAACAAGCATTAACTATTTTATTAGGCGCTTTAA
TACTAGTAAGCTATTGGCAAATTATCAATATATCAGAAAGCGCAGATAAGTATGCAATACCTTCTCAGCAATTGTACCAA
TTTCAAGTTCAGAAAATTATTAAGCAAGATGAGTTTCAAACAGCATTAGCGAGGTTAGAAAATGGCGATCTGATTTATTT
AAACTGGCAGTCGGATGAGCCGTTAGAATTAGAACAACATTATCAAGCGAATCTTAAGATACGACCTATTGCTGCTCGCT
TAAATATTGGAAATTTTGATCGGCAGCGTTGGTTCTTCGCACATCATTTAAAGGGGAGTGCAACAGTCAAAAAAGCGAAT
AAGCTGGTCTCACAATACGTGAGATCTTTGCGTGTTCAATGGCTGGAATATGTCAGAAAACAATTAGAACCATTTCCATC
TAGGGGACTATTACTGGCATTAGCTTTTGGTGAACGTGCTTGGCTAGCCAATTCAGATTGGCAACTATTTCAACAAACTT
CTACCGCACATTTAATTGCTATTTCCGGCTTACATATTGGGCTAGCGATGGGGATTGGATTCTGGTTGGCAAAGTGTATT
CAGTGGCTTTTTCTACGGATAGGAGTCTTATCTGCTGGAAGCATTTCTATCTTTTTCCCGAGATGTGTAGGGCTAGTTTT
TGCTATTTTCTATAGTTATTTATCCGGTTTTGCGATTCCTACTTTACGGGCATTACTTGCGATTTCTCTTGTCTTATTAT
GTCAATGGCTACGCCGCTATTACACTGCTTGGCAATTATGGTGGCGTATTGTTGCATTATTACTTGTGCTTGATCCTCTC
ACAATTCTATCGGATAGTTTTTGGTTATCGGTTTTAGCCGTACTAAGTTTAATCATTTGGTATCAGTATTTTCCGCTCAC
CAAGCTTTTCCCCTTTTGCAAAAAATGGCAGAAATTTAACCGCTTGTGGCTGTCACTAGTACATTTGCAATTAGGGATTT
TTCTCGTATTTTCTCCAGTACAATTTTTCTTTTTTGAGGGGATTTCACCTTGGGCATTTATCACTAATTTCATAATTGTA
CCGTTATACAGTTTGTTGTTAGTTCCGCTAGTTATCTTTTCATTACTAACTAACAATATATTGAATAGCTGGGCGTGGGC
GGATTGGCTAGCACAGGGGAGTTTGAAAATACTTTCTTTGCTTTCCGCCGATTGGATAACGTTAAGCCAAAGCGAGCAAC
ATTATTTGTTCGCTTTGAATGCGTTGTGTCTATTGTTACTGTACCTCTTACAAGAAAAATTATTTATAAGATATTGGAAA
CTGTTGGGATTATTTGTCTTAAGCAGCAGTTTTGCGATTTTCTTCATCAAGTTTCCGGTTTCACCGGAGTGGGTGACATT
TGATGTCGGACAAGGACTTGCACAGGCACTTGTTTATCAAGATAGCGGTAAAAAACGTGCCATTCTTTACGATACAGGTG
CAAGCTGGAAAGATAAATCGGGGCGAATAGGTTCGATGGCCCAATTAGAAATTTTGCCTTATTTGAAGCGTAATGGAATT
CAAGTAGAAGCCGTTTTTTTAAGCCATGACGATAATGATCACTCCGGTGGAGCGGAAGATATTCTTGCTGAATATCCCCA
CGCACGTCTAATTTCGGCAAGTACTCGCCGTTATGCCAAGCATGATCCTGAAGCCTGTATTGCCGGTCAAACGTGGCAAT
TTGGACAATTTGAATTAAAAGCCATTTATCCGATATCAAGAGTAAAACGCGCGAAGAATGAAGATTCTTGCATTATTTTG
GTAAAAATAGACCGCTTCTCCTTGCTGTTTACCGGTGACACTACCTCAGCAAAAGAAGGTTCATTCGCTCATAAAATCGG
GCAAGTTGATTTCTTACAGATTTCTCATCATGGTAGTAAAACGAGTTCCAGCTATACTCTATTAGCTCAGACAAAACCGC
AAATTGCTATTATTTCTGCAGGACGATGGAATCCTTGGAAAATGCCTCATCAACAAGTATTAACACGCTTATCACAACAA
AATATTAAAACCTTTAGCACTGCAAGGGTAGGGATGGTAAAAGTGAGTTTTGAGAAGGGGAGTTGGAAGATAGAGACGGC
GAGAAATAACAGAAGCCCATGGTATCGAGAGACTTATGGGCTTCCAAATCAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB K0G559

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

41.441

100

0.421


Multiple sequence alignment