Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   AWN69_RS06885 Genome accession   NZ_CP014348
Coordinates   1394005..1394997 (-) Length   330 a.a.
NCBI ID   WP_000224470.1    Uniprot ID   P0ACQ1
Organism   Escherichia coli str. K-12 substr. MG1655 strain JW5437-1     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1389005..1399997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWN69_RS06875 (AWN69_06890) yieP 1391897..1392589 (+) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -
  AWN69_RS06880 (AWN69_06895) mdtD 1392612..1394039 (+) 1428 WP_001280852.1 multidrug transporter subunit MdtD -
  AWN69_RS06885 (AWN69_06900) cytR 1394005..1394997 (-) 993 WP_000224470.1 ribose operon transcriptional repressor RbsR Regulator
  AWN69_RS06890 (AWN69_06905) rbsK 1395001..1395930 (-) 930 WP_001300603.1 ribokinase -
  AWN69_RS06895 (AWN69_06910) rbsB 1396056..1396946 (-) 891 WP_001056271.1 ribose ABC transporter substrate-binding protein RbsB -
  AWN69_RS06900 (AWN69_06915) rbsC 1396971..1397936 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  AWN69_RS06905 (AWN69_06920) rbsA 1397941..1399446 (-) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  AWN69_RS06910 (AWN69_06925) rbsD 1399454..1399873 (-) 420 WP_001301979.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36611.90 Da        Isoelectric Point: 5.2141

>NTDB_id=145541 AWN69_RS06885 WP_000224470.1 1394005..1394997(-) (cytR) [Escherichia coli str. K-12 substr. MG1655 strain JW5437-1]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=145541 AWN69_RS06885 WP_000224470.1 1394005..1394997(-) (cytR) [Escherichia coli str. K-12 substr. MG1655 strain JW5437-1]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGCTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364

Multiple sequence alignment