Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   ASU2_RS08170 Genome accession   NC_018690
Coordinates   1788192..1788485 (+) Length   97 a.a.
NCBI ID   WP_014992292.1    Uniprot ID   K0G7R5
Organism   Actinobacillus suis H91-0380     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1783192..1793485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASU2_RS08140 (ASU2_08020) matP 1783434..1783880 (-) 447 WP_014992287.1 macrodomain Ter protein MatP -
  ASU2_RS08145 (ASU2_08025) - 1783965..1785602 (+) 1638 WP_014992288.1 AAA family ATPase -
  ASU2_RS08150 (ASU2_08030) fabA 1785713..1786243 (+) 531 WP_005624835.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  ASU2_RS08155 (ASU2_08035) comN 1786332..1786859 (+) 528 WP_014992289.1 pilus assembly FimT family protein Machinery gene
  ASU2_RS08160 (ASU2_08040) comO 1786819..1787511 (+) 693 WP_014992290.1 hypothetical protein Machinery gene
  ASU2_RS08165 (ASU2_08045) comP 1787522..1788199 (+) 678 WP_014992291.1 DUF2572 family protein Machinery gene
  ASU2_RS08170 (ASU2_08050) comQ 1788192..1788485 (+) 294 WP_014992292.1 DUF5374 domain-containing protein Machinery gene
  ASU2_RS08175 (ASU2_08055) recC 1788602..1791919 (+) 3318 WP_014992293.1 exodeoxyribonuclease V subunit gamma -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 11220.10 Da        Isoelectric Point: 9.4857

>NTDB_id=1455 ASU2_RS08170 WP_014992292.1 1788192..1788485(+) (comQ) [Actinobacillus suis H91-0380]
MNKLIKSESFISILIGIVIFSLIFISASRWGSHQTEKINYIYQQQQALQIIENQLALKYSKQTCEQYVQQNHLKFKIECQ
ANKISVSFPLGKVEITP

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1455 ASU2_RS08170 WP_014992292.1 1788192..1788485(+) (comQ) [Actinobacillus suis H91-0380]
ATGAATAAGTTAATTAAATCAGAATCATTTATTTCAATACTTATTGGCATTGTAATATTTTCACTTATCTTTATTTCTGC
TTCACGTTGGGGAAGTCATCAAACCGAAAAAATAAATTATATTTATCAGCAACAGCAAGCCTTACAAATTATCGAAAATC
AACTCGCATTAAAATATTCTAAACAAACTTGCGAACAATATGTTCAACAAAATCATTTGAAGTTTAAAATTGAATGCCAA
GCAAATAAAATTAGTGTGAGTTTTCCACTAGGTAAAGTCGAAATTACCCCATAG

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(57-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K0G7R5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value