Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   ASU2_RS08165 Genome accession   NC_018690
Coordinates   1787522..1788199 (+) Length   225 a.a.
NCBI ID   WP_014992291.1    Uniprot ID   K0G6H0
Organism   Actinobacillus suis H91-0380     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1782522..1793199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASU2_RS08140 (ASU2_08020) matP 1783434..1783880 (-) 447 WP_014992287.1 macrodomain Ter protein MatP -
  ASU2_RS08145 (ASU2_08025) - 1783965..1785602 (+) 1638 WP_014992288.1 AAA family ATPase -
  ASU2_RS08150 (ASU2_08030) fabA 1785713..1786243 (+) 531 WP_005624835.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  ASU2_RS08155 (ASU2_08035) comN 1786332..1786859 (+) 528 WP_014992289.1 pilus assembly FimT family protein Machinery gene
  ASU2_RS08160 (ASU2_08040) comO 1786819..1787511 (+) 693 WP_014992290.1 hypothetical protein Machinery gene
  ASU2_RS08165 (ASU2_08045) comP 1787522..1788199 (+) 678 WP_014992291.1 DUF2572 family protein Machinery gene
  ASU2_RS08170 (ASU2_08050) comQ 1788192..1788485 (+) 294 WP_014992292.1 DUF5374 domain-containing protein Machinery gene
  ASU2_RS08175 (ASU2_08055) recC 1788602..1791919 (+) 3318 WP_014992293.1 exodeoxyribonuclease V subunit gamma -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 26548.41 Da        Isoelectric Point: 6.8434

>NTDB_id=1454 ASU2_RS08165 WP_014992291.1 1787522..1788199(+) (comP) [Actinobacillus suis H91-0380]
MTQYKLNGSTLIFSLITISFVLTIILVTKEKFIQSEIKTQHYQRHYLSEKLSILEKIRSKNSNCNLIKPEQLILDRIAEV
KIETEEQKYSFYCIKNSLFVGKKPTKEKYIHFSQLSDVLDISHADIIEIEHLNELPKSSEQDPKIVLVMRDIDETLSQDF
YGIIITNHYFDIKGNAKFYGILYSSYDNNREERNITFKKNVVLNLENKYAHWQELPDSRNMLNNE

Nucleotide


Download         Length: 678 bp        

>NTDB_id=1454 ASU2_RS08165 WP_014992291.1 1787522..1788199(+) (comP) [Actinobacillus suis H91-0380]
ATGACGCAATATAAACTTAACGGAAGCACATTAATTTTCTCACTGATAACCATATCTTTTGTGCTGACCATTATACTTGT
AACAAAAGAAAAGTTCATTCAATCAGAAATAAAAACTCAACATTATCAACGGCATTATTTATCCGAAAAACTTTCTATTC
TCGAAAAAATCCGCTCAAAAAATAGTAATTGTAATCTAATAAAACCTGAGCAACTTATTCTTGATCGCATAGCAGAAGTA
AAAATAGAAACTGAAGAACAAAAATATTCTTTTTACTGTATCAAAAATAGCTTATTTGTAGGAAAAAAACCGACTAAAGA
AAAATATATTCATTTTAGCCAACTATCTGATGTATTAGATATTTCTCATGCTGACATAATAGAGATAGAACATTTAAATG
AACTACCTAAAAGCTCAGAACAAGATCCTAAAATCGTTTTAGTTATGCGTGATATAGATGAAACGCTTAGCCAAGATTTT
TATGGCATAATTATTACCAATCATTACTTCGATATAAAAGGCAATGCTAAATTTTACGGCATATTATATTCATCCTATGA
TAATAATAGAGAAGAACGAAATATTACTTTCAAAAAGAATGTTGTATTAAATTTAGAAAATAAATATGCTCATTGGCAAG
AACTCCCCGATTCAAGGAATATGTTAAATAATGAATAA

Domains

Predicted by InterproScan.

Protein of unknown function (DUF2572) (DUF2572)

(14-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K0G6H0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value