Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AXW77_RS05895 Genome accession   NZ_CP014344
Coordinates   1127839..1128333 (+) Length   164 a.a.
NCBI ID   WP_002859279.1    Uniprot ID   -
Organism   Campylobacter jejuni strain RM3194 voucher USDA:NWG_RM3194-1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1122839..1133333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXW77_RS05880 (AXW77_05880) - 1124225..1125403 (-) 1179 WP_032586703.1 metal-dependent hydrolase -
  AXW77_RS05885 (AXW77_05885) gpsA 1125413..1126309 (-) 897 WP_074470929.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  AXW77_RS05890 (AXW77_05890) gatB 1126306..1127724 (-) 1419 WP_002852902.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  AXW77_RS05895 (AXW77_05895) luxS 1127839..1128333 (+) 495 WP_002859279.1 S-ribosylhomocysteine lyase Regulator
  AXW77_RS05900 (AXW77_05900) - 1128646..1129638 (+) 993 WP_002869635.1 isopenicillin N synthase family oxygenase -
  AXW77_RS05905 (AXW77_05905) - 1129649..1130419 (+) 771 WP_002852735.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  AXW77_RS05910 (AXW77_05910) metE 1130431..1132695 (+) 2265 WP_061099821.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18212.25 Da        Isoelectric Point: 7.3250

>NTDB_id=145493 AXW77_RS05895 WP_002859279.1 1127839..1128333(+) (luxS) [Campylobacter jejuni strain RM3194 voucher USDA:NWG_RM3194-1]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWKAAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=145493 AXW77_RS05895 WP_002859279.1 1127839..1128333(+) (luxS) [Campylobacter jejuni strain RM3194 voucher USDA:NWG_RM3194-1]
ATGCCATTATTAGACAGCTTTAAAGTTGACCATACTAAAATGCCAGCTCCTGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGCGTGTTTGATTTGCGTTTTTGCATACCAAATAAAGACATTATGAGCGAAAAAGGTACTC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGAGATCATTTAAATTCAAATTCAGTTGAAATTATTGATATTTCACCT
ATGGGTTGTCGCACGGGTTTTTATATGAGTTTAATTGGAACACCAGATGAAAAAAGTGTTGCTAAAGCTTGGAAAGCAGC
TATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAGGTTTTAAATCTAGGTATTAGCATAATGAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.671

98.171

0.713