Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   AXW77_RS03105 Genome accession   NZ_CP014344
Coordinates   595269..595652 (+) Length   127 a.a.
NCBI ID   WP_002852281.1    Uniprot ID   Q9PHN2
Organism   Campylobacter jejuni strain RM3194 voucher USDA:NWG_RM3194-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 590269..600652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXW77_RS03085 (AXW77_03085) - 590348..592282 (-) 1935 WP_061099769.1 ribonuclease R family protein -
  AXW77_RS03090 (AXW77_03090) ilvC 592401..593423 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  AXW77_RS03095 (AXW77_03095) - 593427..594509 (+) 1083 WP_061099770.1 divergent polysaccharide deacetylase family protein -
  AXW77_RS03100 (AXW77_03100) dprA 594499..595272 (+) 774 WP_002867721.1 DNA-processing protein DprA Machinery gene
  AXW77_RS03105 (AXW77_03105) dprB 595269..595652 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  AXW77_RS03110 (AXW77_03110) - 595681..596520 (+) 840 WP_011049748.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  AXW77_RS03115 (AXW77_03115) msrA 596697..597194 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  AXW77_RS03120 (AXW77_03120) ppa 597236..597754 (-) 519 WP_002867724.1 inorganic diphosphatase -
  AXW77_RS03125 (AXW77_03125) adk 597764..598342 (-) 579 WP_002859580.1 adenylate kinase -
  AXW77_RS03130 (AXW77_03130) aspS 598339..600090 (-) 1752 WP_002890710.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14088.59 Da        Isoelectric Point: 9.5433

>NTDB_id=145479 AXW77_RS03105 WP_002852281.1 595269..595652(+) (dprB) [Campylobacter jejuni strain RM3194 voucher USDA:NWG_RM3194-1]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=145479 AXW77_RS03105 WP_002852281.1 595269..595652(+) (dprB) [Campylobacter jejuni strain RM3194 voucher USDA:NWG_RM3194-1]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAGATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCCTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PHN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449