Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   SEETH391_RS13450 Genome accession   NZ_CP011396
Coordinates   2773492..2774097 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Thompson str. ATCC 8391 isolate CFSAN000736     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2768492..2779097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SEETH391_RS13435 (SEETH391_13425) helD 2768709..2770763 (-) 2055 WP_017465794.1 DNA helicase IV -
  SEETH391_RS13440 (SEETH391_13430) - 2770887..2771333 (+) 447 WP_001261222.1 YccF domain-containing protein -
  SEETH391_RS13445 (SEETH391_13435) yccS 2771352..2773505 (+) 2154 WP_000950861.1 YccS family putative transporter -
  SEETH391_RS13450 (SEETH391_13440) sxy/tfoX 2773492..2774097 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  SEETH391_RS13455 (SEETH391_13445) sulA 2774314..2774823 (+) 510 WP_017465793.1 SOS-induced cell division inhibitor SulA -
  SEETH391_RS13460 (SEETH391_13450) ompA 2775181..2776233 (+) 1053 WP_001674965.1 porin OmpA -
  SEETH391_RS13465 (SEETH391_13455) matP 2776305..2776757 (-) 453 WP_017465792.1 macrodomain Ter protein MatP -
  SEETH391_RS13470 (SEETH391_13460) - 2776943..2778703 (+) 1761 WP_017465791.1 AAA family ATPase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=145475 SEETH391_RS13450 WP_001202375.1 2773492..2774097(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Thompson str. ATCC 8391 isolate CFSAN000736]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=145475 SEETH391_RS13450 WP_001202375.1 2773492..2774097(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Thompson str. ATCC 8391 isolate CFSAN000736]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment