Detailed information
Bioinformatically predicted
Overview
| Name | radA | Type | Machinery gene |
| Locus tag | SY85_RS17595 | Genome accession | NZ_CP011390 |
| Coordinates | 4128544..4129923 (-) | Length | 459 a.a. |
| NCBI ID | WP_066406179.1 | Uniprot ID | A0A172TYF0 |
| Organism | Flavisolibacter tropicus strain LCS9 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 4123544..4134923
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SY85_RS17585 (SY85_17560) | - | 4126249..4127649 (-) | 1401 | WP_066409926.1 | choice-of-anchor Q domain-containing protein | - |
| SY85_RS17590 (SY85_17565) | - | 4127664..4128419 (-) | 756 | WP_226998875.1 | ComF family protein | - |
| SY85_RS17595 (SY85_17570) | radA | 4128544..4129923 (-) | 1380 | WP_066406179.1 | DNA repair protein RadA | Machinery gene |
| SY85_RS17600 (SY85_17575) | - | 4130370..4131062 (+) | 693 | WP_066406180.1 | zinc metallopeptidase | - |
| SY85_RS17605 (SY85_17580) | - | 4131389..4134475 (+) | 3087 | WP_082886556.1 | SusC/RagA family TonB-linked outer membrane protein | - |
Sequence
Protein
Download Length: 459 a.a. Molecular weight: 50985.64 Da Isoelectric Point: 6.5040
>NTDB_id=145423 SY85_RS17595 WP_066406179.1 4128544..4129923(-) (radA) [Flavisolibacter tropicus strain LCS9]
MSKVKTGFFCQNCGYESAKWLGKCPSCQQWNTFVEELIQKDTKKSAAADWDDYHGNGSTSKKIQPLHLVKTKEHPRLVTI
DAELNRVLGGGIVPGSIVLVAGEPGIGKSTLFLQMGLQLQDVVTLYISGEESEQQIKMRADRLNILNENFFLLTETSTQT
IFNEIKKLKPQLIIVDSIQTLESPFIESAAGSVSQIRECAAEFQQFAKETNTPVFMIGHITKEGSIAGPKLLEHMVDTVL
QFEGDRHYAYRILRTLKNRFGSTSELGIYQMNDTGMNAVANPSEILITQKEDQLSGIAIAATIEGQRPLLIEVQALVTQS
VYGTPQRTVSGFDLRRLQLLLAVLEKRGGFHFGVKDVFLNIAGGLKVEDPSIDLAVLCALLSSFEDVAIPHNICFAGEVG
LSGEIRAVNRIEQRIAEAEKLGFEKIIVSKYNQKGTLKQRHNIEVITMGRVEEVYRHLF
MSKVKTGFFCQNCGYESAKWLGKCPSCQQWNTFVEELIQKDTKKSAAADWDDYHGNGSTSKKIQPLHLVKTKEHPRLVTI
DAELNRVLGGGIVPGSIVLVAGEPGIGKSTLFLQMGLQLQDVVTLYISGEESEQQIKMRADRLNILNENFFLLTETSTQT
IFNEIKKLKPQLIIVDSIQTLESPFIESAAGSVSQIRECAAEFQQFAKETNTPVFMIGHITKEGSIAGPKLLEHMVDTVL
QFEGDRHYAYRILRTLKNRFGSTSELGIYQMNDTGMNAVANPSEILITQKEDQLSGIAIAATIEGQRPLLIEVQALVTQS
VYGTPQRTVSGFDLRRLQLLLAVLEKRGGFHFGVKDVFLNIAGGLKVEDPSIDLAVLCALLSSFEDVAIPHNICFAGEVG
LSGEIRAVNRIEQRIAEAEKLGFEKIIVSKYNQKGTLKQRHNIEVITMGRVEEVYRHLF
Nucleotide
Download Length: 1380 bp
>NTDB_id=145423 SY85_RS17595 WP_066406179.1 4128544..4129923(-) (radA) [Flavisolibacter tropicus strain LCS9]
ATGTCGAAAGTTAAAACAGGATTTTTTTGTCAGAACTGTGGTTATGAAAGTGCAAAATGGTTAGGCAAATGTCCTAGCTG
TCAACAGTGGAACACATTTGTTGAAGAACTCATTCAAAAAGACACAAAAAAATCAGCTGCTGCAGATTGGGATGATTATC
ATGGCAACGGCAGTACATCAAAAAAAATACAACCCCTTCACTTAGTTAAAACAAAAGAGCATCCTCGCTTAGTAACCATT
GATGCAGAACTAAACCGTGTACTAGGTGGTGGTATTGTACCTGGTAGTATTGTATTAGTAGCTGGCGAACCAGGCATTGG
TAAATCCACGCTCTTTTTACAAATGGGTTTACAGTTACAGGATGTAGTTACTCTTTATATCAGCGGAGAAGAAAGTGAGC
AGCAGATAAAAATGCGAGCTGATCGCTTGAATATTCTAAACGAAAATTTCTTCCTCCTCACAGAAACATCTACACAAACG
ATCTTCAATGAAATCAAGAAACTAAAACCTCAATTGATCATTGTTGATTCGATTCAAACATTGGAGTCACCATTTATAGA
ATCGGCTGCCGGCAGCGTATCGCAGATTCGCGAGTGTGCCGCCGAGTTTCAGCAGTTTGCGAAAGAAACCAATACGCCCG
TATTCATGATTGGGCATATTACCAAAGAAGGTAGTATAGCAGGTCCTAAATTACTAGAGCATATGGTAGATACTGTACTG
CAGTTTGAAGGCGATCGTCATTATGCCTACCGCATTTTACGCACACTGAAGAATCGCTTTGGTAGCACATCGGAATTAGG
TATCTACCAAATGAATGATACGGGTATGAATGCTGTAGCAAACCCCAGTGAAATTTTGATCACACAAAAAGAAGATCAAC
TGAGTGGTATTGCTATTGCCGCTACTATCGAAGGACAGCGCCCTCTGCTCATTGAAGTACAAGCACTGGTTACCCAATCG
GTATACGGCACACCTCAACGTACCGTATCGGGTTTTGATCTGCGTCGTTTGCAATTGCTATTAGCCGTGCTGGAAAAAAG
AGGCGGCTTTCATTTTGGGGTGAAAGATGTTTTCCTCAACATAGCTGGTGGACTAAAAGTAGAAGACCCCTCTATTGACC
TGGCTGTTCTGTGTGCGCTTCTTTCATCATTTGAAGATGTTGCCATTCCCCACAACATTTGTTTTGCGGGTGAGGTAGGT
TTGAGTGGAGAGATCCGTGCCGTTAATCGTATTGAACAGCGGATAGCCGAAGCAGAGAAACTGGGCTTTGAAAAAATCAT
CGTATCGAAATACAATCAAAAAGGCACACTTAAACAACGCCATAATATTGAAGTGATCACCATGGGTCGTGTGGAAGAAG
TGTACAGGCATTTGTTTTAG
ATGTCGAAAGTTAAAACAGGATTTTTTTGTCAGAACTGTGGTTATGAAAGTGCAAAATGGTTAGGCAAATGTCCTAGCTG
TCAACAGTGGAACACATTTGTTGAAGAACTCATTCAAAAAGACACAAAAAAATCAGCTGCTGCAGATTGGGATGATTATC
ATGGCAACGGCAGTACATCAAAAAAAATACAACCCCTTCACTTAGTTAAAACAAAAGAGCATCCTCGCTTAGTAACCATT
GATGCAGAACTAAACCGTGTACTAGGTGGTGGTATTGTACCTGGTAGTATTGTATTAGTAGCTGGCGAACCAGGCATTGG
TAAATCCACGCTCTTTTTACAAATGGGTTTACAGTTACAGGATGTAGTTACTCTTTATATCAGCGGAGAAGAAAGTGAGC
AGCAGATAAAAATGCGAGCTGATCGCTTGAATATTCTAAACGAAAATTTCTTCCTCCTCACAGAAACATCTACACAAACG
ATCTTCAATGAAATCAAGAAACTAAAACCTCAATTGATCATTGTTGATTCGATTCAAACATTGGAGTCACCATTTATAGA
ATCGGCTGCCGGCAGCGTATCGCAGATTCGCGAGTGTGCCGCCGAGTTTCAGCAGTTTGCGAAAGAAACCAATACGCCCG
TATTCATGATTGGGCATATTACCAAAGAAGGTAGTATAGCAGGTCCTAAATTACTAGAGCATATGGTAGATACTGTACTG
CAGTTTGAAGGCGATCGTCATTATGCCTACCGCATTTTACGCACACTGAAGAATCGCTTTGGTAGCACATCGGAATTAGG
TATCTACCAAATGAATGATACGGGTATGAATGCTGTAGCAAACCCCAGTGAAATTTTGATCACACAAAAAGAAGATCAAC
TGAGTGGTATTGCTATTGCCGCTACTATCGAAGGACAGCGCCCTCTGCTCATTGAAGTACAAGCACTGGTTACCCAATCG
GTATACGGCACACCTCAACGTACCGTATCGGGTTTTGATCTGCGTCGTTTGCAATTGCTATTAGCCGTGCTGGAAAAAAG
AGGCGGCTTTCATTTTGGGGTGAAAGATGTTTTCCTCAACATAGCTGGTGGACTAAAAGTAGAAGACCCCTCTATTGACC
TGGCTGTTCTGTGTGCGCTTCTTTCATCATTTGAAGATGTTGCCATTCCCCACAACATTTGTTTTGCGGGTGAGGTAGGT
TTGAGTGGAGAGATCCGTGCCGTTAATCGTATTGAACAGCGGATAGCCGAAGCAGAGAAACTGGGCTTTGAAAAAATCAT
CGTATCGAAATACAATCAAAAAGGCACACTTAAACAACGCCATAATATTGAAGTGATCACCATGGGTCGTGTGGAAGAAG
TGTACAGGCATTTGTTTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radA | Bacillus subtilis subsp. subtilis str. 168 |
50.437 |
99.782 |
0.503 |
| radA | Streptococcus mitis NCTC 12261 |
49.351 |
100 |
0.497 |
| radA | Streptococcus mitis SK321 |
49.351 |
100 |
0.497 |
| radA | Streptococcus pneumoniae Rx1 |
49.351 |
100 |
0.497 |
| radA | Streptococcus pneumoniae D39 |
49.351 |
100 |
0.497 |
| radA | Streptococcus pneumoniae R6 |
49.351 |
100 |
0.497 |
| radA | Streptococcus pneumoniae TIGR4 |
49.351 |
100 |
0.497 |