Detailed information    

insolico Bioinformatically predicted

Overview

Name   ddrB   Type   Machinery gene
Locus tag   SY84_RS11375 Genome accession   NZ_CP011389
Coordinates   2325556..2326107 (-) Length   183 a.a.
NCBI ID   WP_046844112.1    Uniprot ID   A0A0F7JQH2
Organism   Deinococcus soli (ex Cha et al. 2016) strain N5     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2320556..2331107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SY84_RS11345 (SY84_11350) - 2320971..2321843 (-) 873 WP_046844106.1 PSP1 domain-containing protein -
  SY84_RS11350 (SY84_11355) rocF 2321943..2322842 (-) 900 WP_046844107.1 arginase -
  SY84_RS11355 (SY84_11360) - 2322960..2323490 (-) 531 WP_046844108.1 GNAT family N-acetyltransferase -
  SY84_RS11360 (SY84_11365) - 2323600..2324247 (+) 648 WP_046844109.1 metallophosphoesterase family protein -
  SY84_RS11365 (SY84_11370) - 2324588..2325007 (+) 420 WP_046844110.1 hypothetical protein -
  SY84_RS11370 (SY84_11375) - 2325017..2325451 (+) 435 WP_046844111.1 hypothetical protein -
  SY84_RS11375 (SY84_11380) ddrB 2325556..2326107 (-) 552 WP_046844112.1 single-stranded DNA-binding protein Machinery gene
  SY84_RS11380 (SY84_11385) - 2326164..2326988 (-) 825 WP_052751252.1 acyl-CoA acyltransferase -
  SY84_RS11385 (SY84_11390) menC 2326994..2328103 (-) 1110 WP_046844113.1 o-succinylbenzoate synthase -
  SY84_RS11395 (SY84_11400) - 2330209..2330463 (+) 255 WP_046844114.1 acyl-CoA-binding protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20359.71 Da        Isoelectric Point: 7.4655

>NTDB_id=145414 SY84_RS11375 WP_046844112.1 2325556..2326107(-) (ddrB) [Deinococcus soli (ex Cha et al. 2016) strain N5]
MLHIEFTTDLGAKVTVDVENASALLDTQRQYGRLGWTSGEIPSGGYQFPLENEPDFDWHLIGARKWTSPDGEELVIHKGH
AYRRRELEAVDSRKMKLPAAVKYSRGAKSTDPEHIREKSDGEFEYVTLAIFRGGRRQDRYATPGARPGTPTQAPAQAARP
APTRPAPTQPRPAPARADDEPPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=145414 SY84_RS11375 WP_046844112.1 2325556..2326107(-) (ddrB) [Deinococcus soli (ex Cha et al. 2016) strain N5]
ATGTTACATATTGAATTCACCACCGACCTGGGCGCCAAAGTCACCGTGGACGTCGAGAATGCCTCGGCGCTCCTCGATAC
GCAGCGGCAGTACGGCCGCCTCGGCTGGACCAGCGGCGAGATCCCCAGCGGCGGCTACCAGTTCCCGCTGGAGAACGAAC
CCGACTTCGACTGGCACCTCATCGGCGCCCGCAAGTGGACCAGCCCCGACGGCGAGGAACTCGTCATCCACAAGGGGCAC
GCCTACCGCCGCCGCGAACTCGAAGCGGTGGACAGCCGCAAGATGAAACTCCCCGCTGCCGTCAAGTACTCCCGCGGCGC
GAAAAGCACCGACCCCGAACACATCCGGGAGAAGAGCGACGGCGAATTCGAGTACGTGACCCTCGCCATCTTCCGCGGCG
GGCGACGCCAGGACCGCTACGCCACCCCCGGCGCCCGCCCCGGCACGCCCACGCAGGCCCCCGCCCAGGCCGCGCGCCCC
GCCCCCACCCGCCCGGCCCCCACGCAGCCCCGCCCCGCCCCGGCACGCGCAGACGACGAACCGCCGTTCTGA

Domains

Predicted by InterproScan.

DdrB-like protein (DdrB)

(3-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F7JQH2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ddrB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

74.39

89.617

0.667

Multiple sequence alignment