Detailed information
Bioinformatically predicted
Overview
| Name | pilV | Type | Machinery gene |
| Locus tag | SY84_RS11050 | Genome accession | NZ_CP011389 |
| Coordinates | 2249323..2249718 (-) | Length | 131 a.a. |
| NCBI ID | WP_046844055.1 | Uniprot ID | A0A0F7JP13 |
| Organism | Deinococcus soli (ex Cha et al. 2016) strain N5 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2244323..2254718
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SY84_RS11035 (SY84_11040) | - | 2247088..2248050 (-) | 963 | WP_046844052.1 | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase | - |
| SY84_RS11040 (SY84_11045) | - | 2248047..2248796 (-) | 750 | WP_046844053.1 | class I SAM-dependent DNA methyltransferase | - |
| SY84_RS11045 (SY84_11050) | - | 2248898..2249269 (-) | 372 | WP_046844054.1 | type IV pilin protein | - |
| SY84_RS11050 (SY84_11055) | pilV | 2249323..2249718 (-) | 396 | WP_046844055.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| SY84_RS11055 (SY84_11060) | dnaB | 2250146..2251492 (+) | 1347 | WP_046844056.1 | replicative DNA helicase | - |
| SY84_RS11060 (SY84_11065) | - | 2251492..2252166 (+) | 675 | WP_046844057.1 | NUDIX hydrolase | - |
| SY84_RS11065 (SY84_11070) | - | 2252252..2252458 (+) | 207 | WP_046844058.1 | hypothetical protein | - |
| SY84_RS11070 (SY84_11075) | - | 2252490..2253218 (+) | 729 | WP_046844059.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| SY84_RS11075 (SY84_11080) | nrdR | 2253271..2253717 (+) | 447 | WP_046844060.1 | transcriptional regulator NrdR | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 13874.93 Da Isoelectric Point: 6.2830
>NTDB_id=145413 SY84_RS11050 WP_046844055.1 2249323..2249718(-) (pilV) [Deinococcus soli (ex Cha et al. 2016) strain N5]
MKNTTQGFTLIELLIVIAIIGILAAVLIPNLLSARTKANESAAQSFVRNTLTAVETKRDSVSGKLDTSITDCKVAQEKTE
EPAGVTSCTIIYGTKDNYGVTLAMQDGKTFFNYDGVNIAKGAAAITTADLK
MKNTTQGFTLIELLIVIAIIGILAAVLIPNLLSARTKANESAAQSFVRNTLTAVETKRDSVSGKLDTSITDCKVAQEKTE
EPAGVTSCTIIYGTKDNYGVTLAMQDGKTFFNYDGVNIAKGAAAITTADLK
Nucleotide
Download Length: 396 bp
>NTDB_id=145413 SY84_RS11050 WP_046844055.1 2249323..2249718(-) (pilV) [Deinococcus soli (ex Cha et al. 2016) strain N5]
ATGAAGAACACCACCCAAGGCTTCACCCTGATCGAGCTGCTCATCGTCATCGCCATCATCGGCATCCTGGCCGCCGTCCT
GATCCCCAACCTGCTCAGCGCCCGCACCAAGGCCAACGAGAGCGCCGCCCAGAGCTTCGTGCGCAACACGCTGACCGCCG
TGGAAACCAAGCGCGATAGCGTCAGCGGTAAACTGGACACCAGTATCACGGACTGCAAGGTGGCGCAGGAAAAGACCGAA
GAGCCTGCCGGTGTCACCAGCTGCACGATCATCTACGGCACCAAGGATAACTATGGCGTGACGCTCGCCATGCAGGACGG
CAAGACCTTCTTCAACTACGATGGGGTCAACATCGCGAAAGGCGCTGCAGCCATCACTACCGCTGACCTCAAGTAA
ATGAAGAACACCACCCAAGGCTTCACCCTGATCGAGCTGCTCATCGTCATCGCCATCATCGGCATCCTGGCCGCCGTCCT
GATCCCCAACCTGCTCAGCGCCCGCACCAAGGCCAACGAGAGCGCCGCCCAGAGCTTCGTGCGCAACACGCTGACCGCCG
TGGAAACCAAGCGCGATAGCGTCAGCGGTAAACTGGACACCAGTATCACGGACTGCAAGGTGGCGCAGGAAAAGACCGAA
GAGCCTGCCGGTGTCACCAGCTGCACGATCATCTACGGCACCAAGGATAACTATGGCGTGACGCTCGCCATGCAGGACGG
CAAGACCTTCTTCAACTACGATGGGGTCAACATCGCGAAAGGCGCTGCAGCCATCACTACCGCTGACCTCAAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilV | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
48.092 |
100 |
0.481 |