Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   SU48_RS08440 Genome accession   NZ_CP011387
Coordinates   1858758..1859390 (-) Length   210 a.a.
NCBI ID   WP_231881572.1    Uniprot ID   -
Organism   Deinococcus puniceus strain DY1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1853758..1864390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SU48_RS08415 (SU48_08440) - 1854219..1854728 (+) 510 WP_064014868.1 hypothetical protein -
  SU48_RS08420 (SU48_08445) - 1854787..1855290 (+) 504 WP_064014869.1 GNAT family N-acetyltransferase -
  SU48_RS08425 (SU48_08450) - 1855384..1855725 (-) 342 WP_064014870.1 hypothetical protein -
  SU48_RS08430 (SU48_08455) - 1855757..1857775 (-) 2019 WP_064014871.1 translation factor GTPase family protein -
  SU48_RS08435 (SU48_08460) mnmD 1857943..1858614 (+) 672 WP_064014872.1 tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD -
  SU48_RS08440 (SU48_08465) comF 1858758..1859390 (-) 633 WP_231881572.1 ComF family protein Machinery gene
  SU48_RS08445 (SU48_08470) - 1859387..1859920 (-) 534 WP_064014873.1 hypothetical protein -
  SU48_RS08450 (SU48_08475) - 1860183..1860494 (+) 312 WP_231881573.1 hypothetical protein -
  SU48_RS08455 (SU48_08480) - 1860512..1860949 (-) 438 WP_064014875.1 hypothetical protein -
  SU48_RS08460 (SU48_08485) - 1861172..1863136 (-) 1965 WP_064014876.1 endonuclease -
  SU48_RS08465 (SU48_08490) - 1863453..1864370 (-) 918 WP_197474633.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22453.13 Da        Isoelectric Point: 10.7364

>NTDB_id=145367 SU48_RS08440 WP_231881572.1 1858758..1859390(-) (comF) [Deinococcus puniceus strain DY1]
MTAFLNVIRALLPRRCPGCDAQLGAEAGLCAACRAALMPRTEWHSPMRPQPEPHLVTLGRYVGTTRRAVRALKYGGAQDL
SGVLGTVLARGIPAEWGVASVVPVPLHSGRQRERGFNQSLLLAEVVGRELGIPAVPAVRRIRATTQQAKLHATERSANLA
GAFQADVAKLPRGPVLLLDDVMTSGSTLLACRDALTTAGVREFYYAVVAR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=145367 SU48_RS08440 WP_231881572.1 1858758..1859390(-) (comF) [Deinococcus puniceus strain DY1]
TTGACTGCCTTCCTGAACGTCATTCGGGCCTTGTTGCCACGCCGTTGCCCCGGTTGCGACGCCCAACTGGGGGCAGAGGC
CGGGCTGTGCGCGGCGTGCCGGGCGGCCCTGATGCCCCGCACAGAGTGGCACAGCCCCATGCGCCCGCAGCCGGAACCGC
ATCTGGTCACGCTGGGGCGCTACGTGGGCACCACCCGCCGCGCCGTGCGTGCCCTGAAATACGGCGGCGCACAAGACTTG
TCGGGCGTGCTGGGAACCGTGCTGGCGCGGGGCATTCCGGCAGAGTGGGGCGTGGCGTCGGTGGTACCCGTGCCGCTCCA
CTCTGGCCGCCAGCGCGAACGCGGGTTCAATCAATCTCTGTTGCTGGCCGAAGTGGTCGGGCGGGAATTGGGCATTCCGG
CTGTGCCTGCCGTGCGCCGAATCCGGGCCACCACGCAGCAGGCCAAGCTGCACGCCACCGAACGCAGCGCCAACCTCGCC
GGGGCATTTCAGGCCGATGTCGCCAAGTTGCCACGTGGCCCCGTGCTGCTGCTGGATGACGTGATGACTTCCGGCTCCAC
GTTGCTGGCCTGCCGTGACGCCCTGACGACTGCCGGAGTGCGCGAGTTTTATTACGCCGTGGTGGCCCGCTGA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(8-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.768

98.571

0.629

Multiple sequence alignment