Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | SU48_RS06415 | Genome accession | NZ_CP011387 |
| Coordinates | 1401881..1403101 (+) | Length | 406 a.a. |
| NCBI ID | WP_064014527.1 | Uniprot ID | A0A172T8Z3 |
| Organism | Deinococcus puniceus strain DY1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1396881..1408101
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SU48_RS06390 (SU48_06405) | - | 1397053..1398513 (-) | 1461 | WP_231881703.1 | amidase family protein | - |
| SU48_RS06395 (SU48_06410) | - | 1398678..1399553 (+) | 876 | WP_064014523.1 | prephenate dehydratase | - |
| SU48_RS06400 (SU48_06415) | - | 1399566..1400327 (-) | 762 | WP_064014524.1 | DUF4388 domain-containing protein | - |
| SU48_RS06405 (SU48_06420) | scpB | 1400538..1401086 (-) | 549 | WP_064014525.1 | SMC-Scp complex subunit ScpB | - |
| SU48_RS06410 (SU48_06425) | - | 1401083..1401754 (-) | 672 | WP_064014526.1 | L-threonylcarbamoyladenylate synthase | - |
| SU48_RS06415 (SU48_06430) | pilC | 1401881..1403101 (+) | 1221 | WP_064014527.1 | type II secretion system F family protein | Machinery gene |
| SU48_RS06420 (SU48_06435) | - | 1403461..1403889 (+) | 429 | WP_064014528.1 | response regulator | - |
| SU48_RS06425 (SU48_06440) | - | 1403903..1404577 (-) | 675 | WP_064014529.1 | ImmA/IrrE family metallo-endopeptidase | - |
| SU48_RS06430 (SU48_06445) | - | 1404611..1405177 (-) | 567 | WP_157451095.1 | hypothetical protein | - |
| SU48_RS06435 (SU48_06450) | - | 1405481..1405819 (+) | 339 | WP_064014531.1 | hypothetical protein | - |
| SU48_RS06440 (SU48_06455) | - | 1406053..1406469 (-) | 417 | WP_064014532.1 | Hsp20/alpha crystallin family protein | - |
| SU48_RS06445 (SU48_06460) | miaA | 1406500..1407450 (+) | 951 | WP_064014533.1 | tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA | - |
Sequence
Protein
Download Length: 406 a.a. Molecular weight: 44366.29 Da Isoelectric Point: 9.5423
>NTDB_id=145365 SU48_RS06415 WP_064014527.1 1401881..1403101(+) (pilC) [Deinococcus puniceus strain DY1]
MPVFEYRVRDQSGKVLKSQMEAETLNQVRDTLRSKNLMIVEIKAPKSGMNADIKIPGLTDRPPGLKQVAIFSKQLATLIN
AGVPLVQSLAILQRQIESKNFQAILKILRNDVESGTPLSEAMAKHPKIFNRLYINLVRAGETSGTLDSVLERIASFQEKE
LALRGKLKSALTYPVVVLVFALGITYFLLTTIVPQFAGILAQLDAPLPLITQFLMAVSDFLRNSGLLVFVFIAAFVFAYR
WYYKTPKGRMVIDDIKLRLPVFGPLIKKSAISSFARTFGLLIGSGVNIIESLEITKGTANNAVVEETIENAKNVVMVGEQ
MSSSLATSKVFPPMVVSMVSIGEETGALDTMLGKVGDFYDREVDEAVDSLTAAIEPLMIVFLGGIVGTIVAGMFLPMFAI
IGQLSQ
MPVFEYRVRDQSGKVLKSQMEAETLNQVRDTLRSKNLMIVEIKAPKSGMNADIKIPGLTDRPPGLKQVAIFSKQLATLIN
AGVPLVQSLAILQRQIESKNFQAILKILRNDVESGTPLSEAMAKHPKIFNRLYINLVRAGETSGTLDSVLERIASFQEKE
LALRGKLKSALTYPVVVLVFALGITYFLLTTIVPQFAGILAQLDAPLPLITQFLMAVSDFLRNSGLLVFVFIAAFVFAYR
WYYKTPKGRMVIDDIKLRLPVFGPLIKKSAISSFARTFGLLIGSGVNIIESLEITKGTANNAVVEETIENAKNVVMVGEQ
MSSSLATSKVFPPMVVSMVSIGEETGALDTMLGKVGDFYDREVDEAVDSLTAAIEPLMIVFLGGIVGTIVAGMFLPMFAI
IGQLSQ
Nucleotide
Download Length: 1221 bp
>NTDB_id=145365 SU48_RS06415 WP_064014527.1 1401881..1403101(+) (pilC) [Deinococcus puniceus strain DY1]
ATGCCGGTCTTCGAATATCGTGTCCGGGACCAGAGCGGCAAGGTCCTGAAGTCCCAGATGGAAGCCGAAACTCTCAATCA
GGTGCGCGATACGCTGCGTTCCAAAAACCTAATGATTGTAGAGATCAAGGCTCCAAAGAGCGGTATGAACGCCGACATCA
AGATTCCGGGCCTAACAGACCGTCCTCCCGGACTGAAGCAAGTGGCGATCTTTAGTAAACAATTGGCTACACTTATTAAT
GCGGGCGTGCCCCTGGTGCAGTCGCTGGCTATTTTGCAGCGTCAAATCGAGAGTAAGAATTTTCAGGCCATTCTAAAAAT
CCTTCGCAACGATGTAGAAAGCGGTACGCCTCTCAGCGAGGCAATGGCTAAACACCCTAAAATCTTTAACCGACTGTATA
TCAACCTTGTGCGTGCGGGCGAGACGAGCGGCACACTCGACAGCGTTCTGGAAAGAATTGCCAGCTTTCAGGAAAAAGAG
TTGGCCCTGCGAGGCAAGCTTAAGAGTGCCTTGACCTACCCCGTCGTGGTGTTGGTCTTCGCTTTGGGGATCACTTACTT
CTTGCTCACGACCATCGTGCCGCAATTTGCAGGAATTCTGGCCCAATTGGACGCCCCCCTTCCCCTCATCACTCAGTTCT
TGATGGCGGTTTCTGATTTCCTCCGCAATAGTGGCTTGCTGGTTTTTGTCTTTATCGCCGCGTTCGTATTTGCCTACCGC
TGGTATTACAAAACACCTAAAGGTCGCATGGTTATCGATGACATCAAGCTCCGGCTCCCTGTGTTCGGCCCACTGATCAA
AAAGAGTGCAATTAGTTCTTTTGCCCGCACATTTGGTCTGCTGATCGGAAGTGGAGTGAATATCATTGAGAGCCTGGAAA
TTACAAAGGGAACAGCCAACAACGCAGTTGTAGAAGAGACGATTGAAAATGCCAAGAATGTGGTGATGGTGGGCGAGCAG
ATGAGTTCCAGTTTAGCGACCAGTAAAGTCTTCCCGCCGATGGTCGTCAGCATGGTGTCTATCGGAGAAGAAACGGGCGC
TCTCGATACGATGTTGGGCAAAGTGGGCGATTTCTATGACCGCGAAGTGGATGAAGCAGTCGATAGCCTCACTGCTGCCA
TCGAACCATTGATGATCGTGTTCCTCGGCGGAATCGTCGGCACGATTGTGGCAGGGATGTTTTTGCCGATGTTCGCTATT
ATTGGGCAGCTCTCGCAATAA
ATGCCGGTCTTCGAATATCGTGTCCGGGACCAGAGCGGCAAGGTCCTGAAGTCCCAGATGGAAGCCGAAACTCTCAATCA
GGTGCGCGATACGCTGCGTTCCAAAAACCTAATGATTGTAGAGATCAAGGCTCCAAAGAGCGGTATGAACGCCGACATCA
AGATTCCGGGCCTAACAGACCGTCCTCCCGGACTGAAGCAAGTGGCGATCTTTAGTAAACAATTGGCTACACTTATTAAT
GCGGGCGTGCCCCTGGTGCAGTCGCTGGCTATTTTGCAGCGTCAAATCGAGAGTAAGAATTTTCAGGCCATTCTAAAAAT
CCTTCGCAACGATGTAGAAAGCGGTACGCCTCTCAGCGAGGCAATGGCTAAACACCCTAAAATCTTTAACCGACTGTATA
TCAACCTTGTGCGTGCGGGCGAGACGAGCGGCACACTCGACAGCGTTCTGGAAAGAATTGCCAGCTTTCAGGAAAAAGAG
TTGGCCCTGCGAGGCAAGCTTAAGAGTGCCTTGACCTACCCCGTCGTGGTGTTGGTCTTCGCTTTGGGGATCACTTACTT
CTTGCTCACGACCATCGTGCCGCAATTTGCAGGAATTCTGGCCCAATTGGACGCCCCCCTTCCCCTCATCACTCAGTTCT
TGATGGCGGTTTCTGATTTCCTCCGCAATAGTGGCTTGCTGGTTTTTGTCTTTATCGCCGCGTTCGTATTTGCCTACCGC
TGGTATTACAAAACACCTAAAGGTCGCATGGTTATCGATGACATCAAGCTCCGGCTCCCTGTGTTCGGCCCACTGATCAA
AAAGAGTGCAATTAGTTCTTTTGCCCGCACATTTGGTCTGCTGATCGGAAGTGGAGTGAATATCATTGAGAGCCTGGAAA
TTACAAAGGGAACAGCCAACAACGCAGTTGTAGAAGAGACGATTGAAAATGCCAAGAATGTGGTGATGGTGGGCGAGCAG
ATGAGTTCCAGTTTAGCGACCAGTAAAGTCTTCCCGCCGATGGTCGTCAGCATGGTGTCTATCGGAGAAGAAACGGGCGC
TCTCGATACGATGTTGGGCAAAGTGGGCGATTTCTATGACCGCGAAGTGGATGAAGCAGTCGATAGCCTCACTGCTGCCA
TCGAACCATTGATGATCGTGTTCCTCGGCGGAATCGTCGGCACGATTGTGGCAGGGATGTTTTTGCCGATGTTCGCTATT
ATTGGGCAGCTCTCGCAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Thermus thermophilus HB27 |
61.33 |
100 |
0.613 |