Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   SU48_RS02660 Genome accession   NZ_CP011387
Coordinates   579633..581942 (+) Length   769 a.a.
NCBI ID   WP_082869634.1    Uniprot ID   -
Organism   Deinococcus puniceus strain DY1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 574633..586942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SU48_RS02635 (SU48_02650) - 575393..576664 (-) 1272 WP_064013895.1 S41 family peptidase -
  SU48_RS02640 (SU48_02655) - 576661..577479 (-) 819 WP_064013896.1 hypothetical protein -
  SU48_RS02645 (SU48_02660) - 577657..578304 (+) 648 WP_082869633.1 response regulator transcription factor -
  SU48_RS02650 (SU48_02665) - 578315..579127 (-) 813 WP_064013898.1 hypothetical protein -
  SU48_RS02655 (SU48_02670) comEA 579197..579607 (+) 411 WP_064013899.1 helix-hairpin-helix domain-containing protein Machinery gene
  SU48_RS02660 (SU48_02675) comEC 579633..581942 (+) 2310 WP_082869634.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SU48_RS02665 (SU48_02680) - 582087..583079 (+) 993 WP_064013901.1 malate dehydrogenase -
  SU48_RS02670 (SU48_02685) - 583460..584434 (+) 975 WP_064013902.1 ferritin-like domain-containing protein -
  SU48_RS02675 (SU48_02690) - 584525..585910 (-) 1386 WP_064013903.1 hypothetical protein -

Sequence

Protein


Download         Length: 769 a.a.        Molecular weight: 81069.31 Da        Isoelectric Point: 10.7333

>NTDB_id=145362 SU48_RS02660 WP_082869634.1 579633..581942(+) (comEC) [Deinococcus puniceus strain DY1]
MAVPLQPHEVVTGRHAEKGGVAPRRTAPRPLPKFPASPTSGGRLAWTVPAVLGVIGGILLGLGIGWGGLAVVVGLLLAWF
DARPLLAGAALLGGAAGFGSVRVQAAQPDPMTPWIGAQVTLTGDWDGQFLTLHDPRARLAVAPKPGIPTGRVTLSGRLVR
PDSRRIPGGFDQAAWLRSQGGLFLPTPTAVLMAAQVRSSTPENGLRGWFRRGLTVGLGQREAALMQAIELGDRNDIGQEK
FAEGYGVRDAFNRAGLAHLMALSGQNVALITGVLIWLLTRAGVPNLWRYLAPALLLVPYLVQLVGFSPSITRAVIMGFAV
MIGLAVGRGKPDGLGITAFAALACLLPFPMWLLDVGFQLSFLAVLALLLSGKVAALLPPKWPMWLRLALVATVLAELGTL
PIIASTFGQIPLVGLPANLLAGAVMVVLVPLGFLAGLLGPAAILINWLVSIFANMLLLIAETFGRAPVLSWGTVSAAGYV
AYALAAGAGVLWLRGRIRAPAALGTVLACMVFTALPPRLNPPCEIVFLDVGQGDATLIRLPGFTALVDAGGSVNSDYDVG
ERTVLPALRALGVRKLDLLIATHADTDHIEGISGVLRGLPVGEMWVGHLKTDDPVLTAVLLTARERRVPVREVRRGDQLK
VSGLTLNVLWPVGNVWSTEDNDNSVAVTLELPTAGGKLWRTAILGDLADPAEALISAGKLDLLKAAHHGSRFSTGQTVLA
QTRPEDVLISVGARNTYGHPHPTVLARIQAVRAKVWRTDQMGTVRWPLP

Nucleotide


Download         Length: 2310 bp        

>NTDB_id=145362 SU48_RS02660 WP_082869634.1 579633..581942(+) (comEC) [Deinococcus puniceus strain DY1]
ATGGCCGTTCCCCTTCAGCCCCATGAGGTGGTCACTGGACGCCACGCGGAGAAAGGAGGCGTTGCGCCGCGCCGTACAGC
ACCTCGTCCCTTGCCCAAATTTCCCGCTTCCCCCACCTCTGGCGGACGCCTCGCGTGGACGGTTCCTGCCGTGCTAGGCG
TGATCGGCGGCATTCTGCTGGGGCTGGGTATCGGCTGGGGCGGTTTGGCGGTGGTGGTGGGCTTATTGCTGGCTTGGTTC
GATGCTCGCCCGTTGTTGGCAGGAGCGGCCCTGCTGGGCGGCGCGGCAGGCTTCGGCTCCGTGCGCGTGCAGGCCGCCCA
ACCTGACCCCATGACCCCGTGGATTGGTGCACAGGTGACGCTGACGGGCGACTGGGACGGCCAATTCCTGACACTACATG
ACCCACGCGCACGGCTGGCGGTGGCCCCCAAACCCGGCATTCCCACAGGCCGCGTCACGCTCAGTGGGCGGCTGGTGCGT
CCCGACAGTCGGCGCATTCCCGGCGGCTTCGATCAGGCGGCGTGGCTGCGCTCGCAGGGGGGGTTGTTTTTGCCCACGCC
AACCGCCGTTCTGATGGCGGCTCAGGTGCGCTCCAGCACCCCCGAAAACGGCCTGCGCGGGTGGTTCCGGCGTGGCTTGA
CCGTGGGCCTCGGCCAACGCGAAGCGGCGCTGATGCAGGCCATCGAACTTGGAGACCGCAACGACATCGGGCAAGAAAAG
TTCGCGGAAGGCTACGGCGTGCGCGACGCCTTCAACCGAGCGGGGCTGGCGCACCTGATGGCCTTGTCGGGCCAAAACGT
GGCCCTGATTACGGGCGTGCTGATCTGGCTGCTCACGCGGGCGGGTGTGCCGAACCTGTGGCGCTACCTCGCCCCCGCCT
TGCTGCTCGTTCCCTATCTGGTGCAGTTGGTGGGGTTTTCGCCCTCCATCACGCGGGCCGTCATCATGGGCTTCGCGGTC
ATGATCGGGCTGGCGGTGGGGCGCGGCAAACCCGATGGGCTGGGCATCACGGCGTTCGCGGCGTTGGCCTGCCTGCTCCC
TTTTCCCATGTGGCTGCTGGATGTTGGCTTTCAGTTGTCGTTTTTGGCGGTGTTGGCGCTGCTGTTGTCGGGCAAAGTGG
CGGCGTTGCTGCCCCCCAAGTGGCCGATGTGGCTCCGGCTGGCCCTTGTTGCCACCGTGCTGGCCGAATTGGGCACGCTG
CCCATTATTGCCAGCACTTTTGGGCAGATTCCGCTGGTGGGCCTGCCTGCCAATCTGCTGGCGGGAGCCGTGATGGTGGT
GCTGGTGCCGCTGGGCTTTTTGGCGGGATTGCTCGGCCCTGCCGCCATTCTGATCAACTGGCTGGTGTCCATTTTTGCCA
ACATGCTGCTCCTGATTGCCGAAACCTTTGGCCGCGCCCCGGTGCTGAGTTGGGGCACCGTCAGCGCCGCCGGATACGTG
GCCTACGCGCTGGCGGCGGGCGCGGGCGTGCTGTGGCTGCGGGGCCGAATTCGTGCGCCCGCCGCGCTGGGTACGGTGCT
GGCCTGCATGGTGTTCACCGCCCTCCCGCCGCGCCTGAATCCTCCCTGCGAAATTGTGTTTTTGGACGTTGGGCAAGGGG
ATGCCACCCTAATCCGCTTGCCGGGATTCACGGCGTTGGTGGACGCGGGCGGCAGCGTGAATTCCGACTACGACGTGGGA
GAGCGCACGGTGCTTCCGGCGTTGCGGGCGCTGGGTGTGCGAAAGCTCGATCTGCTGATCGCCACGCACGCAGACACCGA
CCACATCGAAGGCATTTCGGGCGTGCTGCGCGGCTTGCCAGTAGGAGAAATGTGGGTGGGCCACCTCAAAACCGATGACC
CCGTGCTGACGGCGGTGCTCCTGACCGCCCGTGAACGCCGCGTGCCCGTGCGCGAGGTGCGGCGCGGCGACCAACTGAAG
GTGTCCGGCCTGACCCTGAATGTGCTGTGGCCGGTGGGCAACGTCTGGAGCACCGAAGACAACGACAATTCTGTAGCAGT
GACGCTGGAATTGCCCACTGCTGGGGGCAAGCTGTGGCGCACCGCCATTTTGGGTGACCTTGCCGACCCCGCCGAAGCTC
TGATCAGCGCGGGCAAACTGGACTTGCTGAAGGCTGCACATCACGGCAGCCGTTTTTCTACCGGGCAAACCGTACTGGCC
CAGACCCGCCCCGAAGACGTGCTGATCAGCGTGGGCGCACGCAACACCTACGGCCATCCTCATCCCACCGTCTTGGCCCG
TATACAGGCGGTGAGGGCTAAGGTCTGGCGAACGGATCAGATGGGGACGGTGCGCTGGCCGTTGCCCTAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(529-605)

Competence protein (Competence)

(247-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

66.94

95.189

0.637

Multiple sequence alignment