Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   SU48_RS02655 Genome accession   NZ_CP011387
Coordinates   579197..579607 (+) Length   136 a.a.
NCBI ID   WP_064013899.1    Uniprot ID   A0A172T7C2
Organism   Deinococcus puniceus strain DY1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 574197..584607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SU48_RS02630 (SU48_02645) mltG 574255..575277 (+) 1023 WP_064013894.1 endolytic transglycosylase MltG -
  SU48_RS02635 (SU48_02650) - 575393..576664 (-) 1272 WP_064013895.1 S41 family peptidase -
  SU48_RS02640 (SU48_02655) - 576661..577479 (-) 819 WP_064013896.1 hypothetical protein -
  SU48_RS02645 (SU48_02660) - 577657..578304 (+) 648 WP_082869633.1 response regulator transcription factor -
  SU48_RS02650 (SU48_02665) - 578315..579127 (-) 813 WP_064013898.1 hypothetical protein -
  SU48_RS02655 (SU48_02670) comEA 579197..579607 (+) 411 WP_064013899.1 helix-hairpin-helix domain-containing protein Machinery gene
  SU48_RS02660 (SU48_02675) comEC 579633..581942 (+) 2310 WP_082869634.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SU48_RS02665 (SU48_02680) - 582087..583079 (+) 993 WP_064013901.1 malate dehydrogenase -
  SU48_RS02670 (SU48_02685) - 583460..584434 (+) 975 WP_064013902.1 ferritin-like domain-containing protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14283.83 Da        Isoelectric Point: 10.5566

>NTDB_id=145361 SU48_RS02655 WP_064013899.1 579197..579607(+) (comEA) [Deinococcus puniceus strain DY1]
MNIWKGDLWKQADTERKWALALAAGVLLLGGLTLGPALFPSPRVPTLTRQMLPPIAAAPSADPPVYPRTASVQPLISGRL
NLNTASTEQLEALPKVGPSMAALIVAARPLRSLADLDAIKGVGESTLKALTPLVSF

Nucleotide


Download         Length: 411 bp        

>NTDB_id=145361 SU48_RS02655 WP_064013899.1 579197..579607(+) (comEA) [Deinococcus puniceus strain DY1]
GTGAACATCTGGAAGGGCGACCTTTGGAAGCAGGCCGACACGGAACGAAAATGGGCGTTGGCTTTGGCTGCAGGCGTGCT
GCTGCTCGGCGGGCTGACACTGGGGCCAGCGTTGTTTCCGTCGCCGCGAGTGCCTACGCTGACGCGCCAAATGCTGCCGC
CTATTGCTGCCGCGCCGAGTGCCGACCCTCCAGTCTACCCGCGCACCGCCAGCGTGCAGCCGCTCATTTCGGGCCGCCTG
AACCTGAATACAGCCAGCACCGAGCAACTGGAAGCCCTGCCCAAAGTGGGGCCGAGCATGGCCGCCCTGATCGTTGCGGC
CCGCCCACTGCGCTCGTTGGCCGATCTGGACGCGATTAAGGGCGTAGGCGAAAGCACCCTGAAAGCCCTCACGCCACTGG
TCTCGTTTTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(79-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A172T7C2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

68.852

89.706

0.618

Multiple sequence alignment