Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   AAX10_RS04235 Genome accession   NZ_CP011381
Coordinates   946562..947497 (+) Length   311 a.a.
NCBI ID   WP_036362363.1    Uniprot ID   A0A378PKS0
Organism   Moraxella bovoculi strain 58086     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 941562..952497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAX10_RS04215 (AAX10_04140) - 941662..942987 (+) 1326 WP_046699924.1 Na+/H+ antiporter family protein -
  AAX10_RS04220 (AAX10_04145) - 943038..944480 (-) 1443 WP_158580312.1 M16 family metallopeptidase -
  AAX10_RS04225 (AAX10_04150) - 944496..945893 (-) 1398 WP_046699926.1 M16 family metallopeptidase -
  AAX10_RS10485 - 945931..946062 (-) 132 WP_264673701.1 hypothetical protein -
  AAX10_RS04230 (AAX10_04155) - 946299..946514 (+) 216 WP_036362360.1 hypothetical protein -
  AAX10_RS04235 (AAX10_04160) pilA 946562..947497 (+) 936 WP_036362363.1 signal recognition particle-docking protein FtsY Machinery gene
  AAX10_RS04240 (AAX10_04165) - 947551..948078 (+) 528 WP_046699927.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  AAX10_RS04245 (AAX10_04170) - 948236..949264 (+) 1029 WP_046699928.1 quinone-dependent dihydroorotate dehydrogenase -
  AAX10_RS04250 (AAX10_04175) - 949261..949791 (+) 531 WP_226997820.1 CvpA family protein -
  AAX10_RS04255 (AAX10_04180) purF 949808..951328 (+) 1521 WP_046699929.1 amidophosphoribosyltransferase -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 33694.48 Da        Isoelectric Point: 4.8063

>NTDB_id=145313 AAX10_RS04235 WP_036362363.1 946562..947497(+) (pilA) [Moraxella bovoculi strain 58086]
MSENQGWFSRMKQGLSKSSKNLTEGLMNVLVGGKEIDDELLEEVEDQLLVADIGVDATNRIIKSLTEQTARGDLIYSHSL
YKALKKELVEILEPKVHPLQIDTSKKPFVILMVGVNGVGKTTTIGKLAKRLQGEGKSVMLAAGDTFRAAATEQLQIWGER
NGIPVVAQGHGADSASVIFDAMQSARAKGIDVLIADTAGRLQNKIHLMNELEKVVRVMKKADETAPHETMIVLDAGTGQN
AINQVQIFGEATPLSGITITKLDGTAKGGVVFNVAQNTDVPIRYIGVGERIDDLQAFDPNDFVDALFDEEQ

Nucleotide


Download         Length: 936 bp        

>NTDB_id=145313 AAX10_RS04235 WP_036362363.1 946562..947497(+) (pilA) [Moraxella bovoculi strain 58086]
ATGAGCGAAAATCAAGGCTGGTTTAGCCGAATGAAACAAGGACTGTCCAAGTCTAGCAAAAACCTAACCGAAGGGCTGAT
GAATGTTCTGGTTGGGGGCAAAGAGATTGATGACGAGCTGCTGGAGGAAGTCGAGGATCAGCTTTTGGTGGCGGATATTG
GCGTTGATGCCACGAATCGCATCATCAAGAGCTTAACCGAGCAGACGGCACGTGGCGATTTGATCTATTCGCATTCATTA
TATAAAGCCCTAAAAAAAGAGCTGGTCGAGATTCTAGAACCTAAAGTTCATCCTCTACAGATCGACACGTCAAAAAAACC
ATTCGTCATTCTTATGGTAGGCGTTAATGGCGTGGGTAAGACGACCACCATTGGCAAGCTCGCCAAGCGGCTACAGGGCG
AGGGTAAGTCGGTGATGCTCGCAGCGGGGGACACTTTTCGCGCTGCTGCAACCGAGCAGCTGCAGATCTGGGGCGAGCGT
AATGGCATTCCTGTGGTTGCCCAAGGACATGGTGCTGACAGTGCTTCGGTCATCTTTGATGCCATGCAGTCAGCGCGCGC
CAAAGGCATTGATGTGCTGATCGCAGATACAGCAGGACGCCTGCAGAACAAGATACATCTGATGAACGAACTAGAGAAAG
TCGTACGCGTCATGAAGAAGGCAGATGAGACGGCGCCGCATGAGACGATGATCGTTCTAGATGCTGGCACAGGTCAAAAC
GCCATCAACCAAGTTCAGATATTTGGTGAGGCGACGCCATTGTCAGGCATTACCATCACTAAGCTAGACGGCACCGCCAA
GGGAGGTGTGGTCTTTAACGTTGCTCAGAATACCGATGTGCCGATTCGCTACATTGGCGTGGGCGAGCGCATTGATGATT
TGCAGGCATTTGATCCTAATGATTTTGTCGATGCGCTGTTTGATGAAGAGCAATAA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(22-88)

SRP54-type protein, GTPase domain (SRP54)

(107-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A378PKS0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

52.475

97.428

0.511

Multiple sequence alignment