Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   AAX11_RS04405 Genome accession   NZ_CP011379
Coordinates   899805..900740 (+) Length   311 a.a.
NCBI ID   WP_036362363.1    Uniprot ID   A0A378PKS0
Organism   Moraxella bovoculi strain 33362     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 894805..905740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAX11_RS04390 (AAX11_04390) - 894908..896233 (+) 1326 WP_046696511.1 Na+/H+ antiporter family protein -
  AAX11_RS04395 (AAX11_04395) - 896284..897726 (-) 1443 WP_080946025.1 pitrilysin family protein -
  AAX11_RS04400 (AAX11_04400) - 897742..899139 (-) 1398 WP_046696512.1 pitrilysin family protein -
  AAX11_RS12250 - 899177..899308 (-) 132 WP_264673335.1 hypothetical protein -
  AAX11_RS11665 - 899545..899757 (+) 213 WP_155399998.1 hypothetical protein -
  AAX11_RS04405 (AAX11_04405) pilA 899805..900740 (+) 936 WP_036362363.1 signal recognition particle-docking protein FtsY Machinery gene
  AAX11_RS04410 (AAX11_04410) - 900794..901321 (+) 528 WP_046696513.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  AAX11_RS04415 (AAX11_04415) - 901478..902506 (+) 1029 WP_046696514.1 quinone-dependent dihydroorotate dehydrogenase -
  AAX11_RS04420 (AAX11_04420) - 902503..903033 (+) 531 WP_046696515.1 CvpA family protein -
  AAX11_RS04425 (AAX11_04425) purF 903050..904570 (+) 1521 WP_046696516.1 amidophosphoribosyltransferase -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 33694.48 Da        Isoelectric Point: 4.8063

>NTDB_id=145286 AAX11_RS04405 WP_036362363.1 899805..900740(+) (pilA) [Moraxella bovoculi strain 33362]
MSENQGWFSRMKQGLSKSSKNLTEGLMNVLVGGKEIDDELLEEVEDQLLVADIGVDATNRIIKSLTEQTARGDLIYSHSL
YKALKKELVEILEPKVHPLQIDTSKKPFVILMVGVNGVGKTTTIGKLAKRLQGEGKSVMLAAGDTFRAAATEQLQIWGER
NGIPVVAQGHGADSASVIFDAMQSARAKGIDVLIADTAGRLQNKIHLMNELEKVVRVMKKADETAPHETMIVLDAGTGQN
AINQVQIFGEATPLSGITITKLDGTAKGGVVFNVAQNTDVPIRYIGVGERIDDLQAFDPNDFVDALFDEEQ

Nucleotide


Download         Length: 936 bp        

>NTDB_id=145286 AAX11_RS04405 WP_036362363.1 899805..900740(+) (pilA) [Moraxella bovoculi strain 33362]
ATGAGCGAAAATCAAGGCTGGTTTAGCCGAATGAAACAAGGACTGTCCAAGTCTAGCAAAAACCTAACCGAAGGGCTGAT
GAATGTTCTGGTTGGGGGCAAGGAGATTGATGACGAGCTGCTGGAGGAAGTCGAGGATCAGCTCTTGGTGGCGGATATTG
GCGTTGATGCCACGAATCGCATCATCAAGAGCTTAACCGAGCAGACGGCGCGTGGCGATTTGATCTATTCGCATTCATTA
TATAAAGCCCTAAAAAAAGAGCTGGTCGAGATTCTAGAGCCTAAAGTTCATCCTCTACAGATCGACACGTCAAAAAAACC
ATTCGTCATTCTCATGGTAGGCGTTAATGGTGTGGGCAAGACGACCACCATTGGCAAGCTCGCCAAGCGACTACAAGGCG
AGGGTAAGTCGGTGATGCTCGCAGCGGGGGACACTTTCCGCGCTGCTGCAACCGAGCAGCTGCAGATCTGGGGCGAGCGT
AATGGCATTCCTGTGGTTGCCCAAGGACATGGTGCTGACAGTGCTTCGGTCATCTTTGATGCCATGCAGTCAGCGCGCGC
CAAAGGCATTGATGTGCTGATCGCAGATACAGCAGGACGCCTGCAGAATAAGATACATCTGATGAACGAACTAGAGAAAG
TCGTACGCGTCATGAAGAAGGCAGATGAGACGGCGCCGCATGAGACGATGATCGTTCTAGATGCTGGCACAGGTCAAAAC
GCCATCAACCAAGTTCAGATATTTGGTGAGGCGACGCCATTGTCAGGCATTACCATCACTAAGCTAGACGGCACCGCCAA
GGGGGGTGTGGTCTTTAACGTTGCTCAGAATACCGATGTGCCGATTCGCTATATTGGCGTGGGCGAGCGCATTGATGATT
TGCAGGCATTTGATCCTAATGATTTTGTCGATGCGCTGTTTGATGAAGAGCAATAA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(22-88)

SRP54-type protein, GTPase domain (SRP54)

(107-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A378PKS0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

52.475

97.428

0.511

Multiple sequence alignment