Detailed information NTG0145264

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C3026_RS15050
• Genome accession: NZ_CP014272
• Coordinates: 2968705..2969697 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081588.1
• Uniprot ID: Q540P0
• Organism: Escherichia coli K-12 strain K-12 C3026
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2963705..2974697

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C3026_RS15030 (C3026_15055)	otnK	2964481..2965647 (+)	1167	WP_001393459.1	3-oxo-tetronate kinase	-
C3026_RS15035 (C3026_15060)	ygbL	2965739..2966377 (+)	639	WP_001278991.1	aldolase	-
C3026_RS15040 (C3026_15065)	ygbM	2966382..2967158 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
C3026_RS15045 (C3026_15070)	ygbN	2967247..2968611 (+)	1365	WP_000104441.1	GntP family transporter	-
C3026_RS15050 (C3026_15075)	rpoS	2968705..2969697 (-)	993	WP_000081588.1	RNA polymerase sigma factor RpoS	Regulator
C3026_RS15055 (C3026_15080)	nlpD	2969760..2970854 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
C3026_RS15060 (C3026_15085)	pcm	2971039..2971665 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
C3026_RS15065 (C3026_15090)	surE	2971659..2972420 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
C3026_RS15070 (C3026_15095)	truD	2972401..2973450 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
C3026_RS15075 (C3026_15100)	ispF	2973447..2973926 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C3026_RS15080 (C3026_15105)	ispD	2973926..2974636 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37971.86 Da
• Isoelectric Point: 4.5886

>NTDB_id=145264 C3026_RS15050 WP_000081588.1 2968705..2969697(-) (rpoS) [Escherichia coli K-12 strain K-12 C3026]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=145264 C3026_RS15050 WP_000081588.1 2968705..2969697(-) (rpoS) [Escherichia coli K-12 strain K-12 C3026]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

3D structure

• AlphaFold DB: Q540P0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715