Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   C3026_RS14585 Genome accession   NZ_CP014272
Coordinates   2878532..2879014 (+) Length   160 a.a.
NCBI ID   WP_001407480.1    Uniprot ID   P52140
Organism   Escherichia coli K-12 strain K-12 C3026     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2873532..2884014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3026_RS28885 - 2874148..2874300 (-) 153 Protein_2842 glutaredoxin domain-containing protein -
  C3026_RS14570 (C3026_14595) - 2874313..2875328 (-) 1016 Protein_2843 arsenic transporter -
  C3026_RS14575 (C3026_14600) yfjW 2875464..2877167 (+) 1704 WP_000896263.1 protein YfjW -
  C3026_RS26175 - 2877802..2877962 (+) 161 Protein_2845 DUF905 family protein -
  C3026_RS29020 - 2877930..2878052 (-) 123 WP_001407482.1 hypothetical protein -
  C3026_RS14580 (C3026_14605) lfgA 2878065..2878523 (+) 459 WP_000211841.1 antirestriction protein -
  C3026_RS14585 (C3026_14610) radC 2878532..2879014 (+) 483 WP_001407480.1 JAB domain-containing protein Machinery gene
  C3026_RS26180 ypjJ 2879023..2879223 (+) 201 WP_001395452.1 DUF987 domain-containing protein -
  C3026_RS14590 (C3026_14615) yfjZ 2879261..2879578 (+) 318 WP_000072690.1 type IV toxin-antitoxin system YeeU family antitoxin -
  C3026_RS14595 (C3026_14620) ypjF 2879599..2879928 (+) 330 WP_001094400.1 type IV toxin-antitoxin system toxin YpjF -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17963.75 Da        Isoelectric Point: 8.6079

>NTDB_id=145260 C3026_RS14585 WP_001407480.1 2878532..2879014(+) (radC) [Escherichia coli K-12 strain K-12 C3026]
MMEQSLIPQTPVLPLTAQRTVKRALTLLDRHLRETGVAFTSTQAARDWLKLKMAGLEREEFMMLYLNQQNQLIAHETLFA
GSISSTEVHPREVVKRALYFNAAAVILAHNHPSGDTTPSQADKTITQRLVQALQLVDIRVPDHLIVGGRQIYSFAEHGLL

Nucleotide


Download         Length: 483 bp        

>NTDB_id=145260 C3026_RS14585 WP_001407480.1 2878532..2879014(+) (radC) [Escherichia coli K-12 strain K-12 C3026]
ATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCT
GCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGGCTGAAGCTGAAAATGG
CGGGGCTGGAGCGTGAAGAATTTATGATGCTGTATCTGAACCAGCAGAACCAGTTGATTGCCCACGAAACCCTGTTTGCC
GGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGATACT
GGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTC
AGCTCGTTGATATCCGTGTCCCTGACCATCTGATTGTTGGTGGCAGGCAAATCTATTCGTTCGCAGAACACGGTCTGCTT
TGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(40-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P52140

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

57.692

65

0.375