Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   C3026_RS11320 Genome accession   NZ_CP014272
Coordinates   2188294..2189721 (+) Length   475 a.a.
NCBI ID   WP_000980589.1    Uniprot ID   P04995
Organism   Escherichia coli K-12 strain K-12 C3026     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2183294..2194721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3026_RS11285 (C3026_11310) yeeW 2183478..2183672 (+) 195 WP_000988600.1 DUF5983 family protein -
  C3026_RS28480 (C3026_11315) - 2183706..2183798 (+) 93 Protein_2207 DUF957 domain-containing protein -
  C3026_RS26000 - 2184087..2184215 (-) 129 Protein_2208 transposase domain-containing protein -
  C3026_RS11295 (C3026_11320) - 2184287..2184469 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  C3026_RS11300 (C3026_11325) tmaR 2184570..2184899 (-) 330 WP_000450409.1 DUF496 family protein -
  C3026_RS11305 (C3026_11330) yeeA 2185071..2186129 (-) 1059 WP_001200891.1 FUSC family protein -
  C3026_RS11310 (C3026_11335) sbmC 2186327..2186800 (-) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  C3026_RS11315 (C3026_11340) dacD 2186919..2188085 (-) 1167 WP_000830156.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  C3026_RS11320 (C3026_11345) sbcB 2188294..2189721 (+) 1428 WP_000980589.1 exodeoxyribonuclease I Machinery gene
  C3026_RS11325 (C3026_11350) tsuB 2189764..2189991 (-) 228 WP_000234896.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  C3026_RS11330 (C3026_11355) tsuA 2190005..2191063 (-) 1059 WP_000492339.1 thiosulfate utilization transporter TsuA/YeeE -
  C3026_RS11335 (C3026_11360) plaP 2191242..2192600 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  C3026_RS28150 yoeI 2192590..2192652 (-) 63 WP_010723108.1 membrane protein YoeI -
  C3026_RS11340 (C3026_11365) yeeY 2192867..2193796 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  C3026_RS11345 (C3026_11370) yeeZ 2193842..2194666 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54500.81 Da        Isoelectric Point: 5.4700

>NTDB_id=145250 C3026_RS11320 WP_000980589.1 2188294..2189721(+) (sbcB) [Escherichia coli K-12 strain K-12 C3026]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=145250 C3026_RS11320 WP_000980589.1 2188294..2189721(+) (sbcB) [Escherichia coli K-12 strain K-12 C3026]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGTCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGTTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 1FXX
  PDB 2QXF
  PDB 3C94
  PDB 3C95
  PDB 3HL8
  PDB 3HP9
  PDB 4HCB
  PDB 4HCC
  PDB 4JRP
  PDB 4JRQ
  PDB 4JS4
  PDB 4JS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

98.947

0.585